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LINC02908 long intergenic non-protein coding RNA 2908 [ Homo sapiens (human) ]

Gene ID: 401563, updated on 13-May-2022

Summary

Official Symbol
LINC02908provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2908provided by HGNC
Primary source
HGNC:HGNC:31426
See related
Ensembl:ENSG00000180539 AllianceGenome:HGNC:31426
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C9orf139
Expression
Broad expression in spleen (RPKM 1.0), lymph node (RPKM 0.8) and 19 other tissues See more
Orthologs
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Genomic context

See LINC02908 in Genome Data Viewer
Location:
9q34.3
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (137027464..137037955)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (149261899..149273086)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (139921916..139932407)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene PAXX non-homologous end joining factor Neighboring gene chloride intracellular channel 3 Neighboring gene ATP binding cassette subfamily A member 2 Neighboring gene fucosyltransferase 7 Neighboring gene neural proliferation, differentiation and control 1 Neighboring gene uncharacterized LOC105376327 Neighboring gene ectonucleoside triphosphate diphosphohydrolase 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Other Names

  • uncharacterized protein C9orf139

Clone Names

  • FLJ36268, FLJ42909

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_171031.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL807752
    Related
    ENST00000623196.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    137027464..137037955
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    149261899..149273086
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_207511.2: Suppressed sequence

    Description
    NM_207511.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.