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LOC401442 uncharacterized LOC401442 [ Homo sapiens (human) ]

Gene ID: 401442, updated on 8-Nov-2023

Summary

Gene symbol
LOC401442
Gene description
uncharacterized LOC401442
See related
Ensembl:ENSG00000282375
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See LOC401442 in Genome Data Viewer
Location:
8p23.3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (738548..740374)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (530128..531965)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (688548..690374)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902054 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:647979-648498 Neighboring gene glutamate rich 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:669760-670295 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:670296-670830 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:677860-678646 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:678707-679211 Neighboring gene uncharacterized LOC124902044 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:728526-729090 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:736241-736398 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:743529-744064 Neighboring gene DLG associated protein 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:790357-791126 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:810507-811008 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:811009-811508 Neighboring gene uncharacterized LOC105377777 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:840949-841688 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:841689-842428 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:851295-851953 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:851954-852611 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:855381-855880 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:864299-864799 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:864873-865374 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:883096-883666 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:888712-889264 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:888158-888711 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:890486-890986 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:899165-900128 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:912422-912922 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:914952-916151 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:945571-946770 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:952935-953435 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:963216-964415 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:966834-968033 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:972311-972811 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:971810-972310 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:975802-976302 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr8:1007495-1008126 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:1008127-1008757 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:1011532-1012388 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:1016834-1017358 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:1020420-1020947 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:1020948-1021474 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:1026287-1026787 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:1054437-1054938 Neighboring gene uncharacterized LOC124900249 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:1058215-1059131

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134292.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC100797, BC028401, BC067903
    Related
    ENST00000631653.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    738548..740374
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187572.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    20139..21965
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    530128..531965
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)