U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC00242 long intergenic non-protein coding RNA 242 [ Homo sapiens (human) ]

Gene ID: 401288, updated on 13-May-2022

Summary

Official Symbol
LINC00242provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 242provided by HGNC
Primary source
HGNC:HGNC:21249
See related
Ensembl:ENSG00000229214 AllianceGenome:HGNC:21249
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C6orf122; NCRNA00242; dJ266L20.5
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LINC00242 in Genome Data Viewer
Location:
6q27
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (169788790..169798825, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (171142399..171152438, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (170188886..170198921, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene chromosome 6 open reading frame 120 Neighboring gene PHD finger protein 10 Neighboring gene dynein light chain Tctex-type 2 Neighboring gene ER membrane associated RNA degradation Neighboring gene long intergenic non-protein coding RNA 574 Neighboring gene zinc finger protein 227-like Neighboring gene uncharacterized LOC107986674

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026781.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK056013, BC122871
    Related
    ENST00000437615.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    169788790..169798825 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187552.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    63992..74027 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    171142399..171152438 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_207502.1: Suppressed sequence

    Description
    NM_207502.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.