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STMND1 stathmin domain containing 1 [ Homo sapiens (human) ]

Gene ID: 401236, updated on 22-Jan-2020

Summary

Official Symbol
STMND1provided by HGNC
Official Full Name
stathmin domain containing 1provided by HGNC
Primary source
HGNC:HGNC:44668
See related
Ensembl:ENSG00000230873
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 4.2), gall bladder (RPKM 2.8) and 4 other tissues See more
Orthologs

Genomic context

See STMND1 in Genome Data Viewer
Location:
6p22.3
Exon count:
5
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (17102050..17131378)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (17102489..17131603)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986573 Neighboring gene uncharacterized LOC105374951 Neighboring gene uncharacterized LOC101928463 Neighboring gene NFE2L2 motif-containing MPRA enhancer 96/97 Neighboring gene RNA binding motif protein 24

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Homology

Clone Names

  • FLJ23152

Gene Ontology Provided by GOA

Function Evidence Code Pubs
tubulin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
microtubule depolymerization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
neuron projection development IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of cytoskeleton organization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of microtubule polymerization or depolymerization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
neuron projection IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
stathmin domain-containing protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001190766.2NP_001177695.1  stathmin domain-containing protein 1

    See identical proteins and their annotated locations for NP_001177695.1

    Status: VALIDATED

    Source sequence(s)
    AL138740
    Consensus CDS
    CCDS58997.1
    UniProtKB/Swiss-Prot
    H3BQB6
    Related
    ENSP00000455698.1, ENST00000536551.6

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    17102050..17131378
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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