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PRR27 proline rich 27 [ Homo sapiens (human) ]

Gene ID: 401137, updated on 25-Jan-2022

Summary

Official Symbol
PRR27provided by HGNC
Official Full Name
proline rich 27provided by HGNC
Primary source
HGNC:HGNC:33193
See related
Ensembl:ENSG00000187533 AllianceGenome:HGNC:33193
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C4orf40
Summary
Located in extracellular exosome. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Restricted expression toward salivary gland (RPKM 399.7) See more
Orthologs
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Genomic context

See PRR27 in Genome Data Viewer
Location:
4q13.3
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 4 NC_000004.12 (70154237..70166609)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (71019954..71032326)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene casein alpha s2 like A, pseudogene Neighboring gene casein alpha s2 like B, pseudogene Neighboring gene uncharacterized LOC105377270 Neighboring gene odontogenic, ameloblast associated

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_214711.4NP_999876.2  proline-rich protein 27 precursor

    See identical proteins and their annotated locations for NP_999876.2

    Status: VALIDATED

    Source sequence(s)
    AC104811, BX485867, BX640892, BX647183, BX647185, BX648872, BX648896
    Consensus CDS
    CCDS3535.1
    UniProtKB/Swiss-Prot
    Q6MZM9
    Related
    ENSP00000343172.5, ENST00000344526.10

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p13 Primary Assembly

    Range
    70154237..70166609
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 PATCHES

Genomic

  1. NW_013171801.1 Reference GRCh38.p13 PATCHES

    Range
    198823..211195
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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