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C3orf85 chromosome 3 open reading frame 85 [ Homo sapiens (human) ]

Gene ID: 401081, updated on 23-Nov-2021

Summary

Official Symbol
C3orf85provided by HGNC
Official Full Name
chromosome 3 open reading frame 85provided by HGNC
Primary source
HGNC:HGNC:53432
See related
Ensembl:ENSG00000241224
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in duodenum (RPKM 15.1), small intestine (RPKM 13.5) and 3 other tissues See more
Orthologs
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Genomic context

See C3orf85 in Genome Data Viewer
Location:
3q13.13
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (109136719..109151401)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (108855566..108870248)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene guanylate cyclase activator 1C Neighboring gene MORC family CW-type zinc finger 1 Neighboring gene MORC1 antisense RNA 1 Neighboring gene long intergenic non-protein coding RNA 488 Neighboring gene RNA, U6 small nuclear 1236, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

Associated conditions

Description Tests
Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.
GeneReviews: Not available
Genome-wide diet-gene interaction analyses for risk of colorectal cancer.
GeneReviews: Not available

General protein information

Preferred Names
uncharacterized protein C3orf85

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001351622.2NP_001338551.1  uncharacterized protein C3orf85 precursor

    Status: VALIDATED

    Source sequence(s)
    AC063923, KF457669
    Consensus CDS
    CCDS87119.1
    Related
    ENSP00000489642.1, ENST00000622536.6

RNA

  1. NR_161294.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC063923, KF457669

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    109136719..109151401
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001351623.1: Suppressed sequence

    Description
    NM_001351623.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
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