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HAGLR HOXD antisense growth-associated long non-coding RNA [ Homo sapiens (human) ]

Gene ID: 401022, updated on 11-Jun-2021

Summary

Official Symbol
HAGLRprovided by HGNC
Official Full Name
HOXD antisense growth-associated long non-coding RNAprovided by HGNC
Primary source
HGNC:HGNC:43755
See related
Ensembl:ENSG00000224189 MIM:618209
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
Mdgt; HOXD-AS1; MIR7704HG
Expression
Biased expression in testis (RPKM 20.0), lung (RPKM 8.2) and 9 other tissues See more
Orthologs
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Genomic context

See HAGLR in Genome Data Viewer
Location:
2q31.1
Exon count:
7
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (176173189..176188958, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (177037917..177053686, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene microRNA 10b Neighboring gene homeobox D4 Neighboring gene homeobox D3 Neighboring gene HAGLR opposite strand lncRNA Neighboring gene microRNA 7704 Neighboring gene homeobox D1 Neighboring gene ribosomal protein lateral stalk subunit P1 pseudogene 4 Neighboring gene ribosomal protein SA pseudogene 25

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Associated conditions

Description Tests
A genome-wide association study identifies susceptibility loci for ovarian cancer at 2q31 and 8q24.
GeneReviews: Not available
GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.
GeneReviews: Not available

General gene information

Markers

Homology

Other Names

  • HOXD cluster antisense RNA 1 (non-protein coding)
  • MIR7704 host

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033979.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (10) uses an alternate upstream promoter and differs in the 5' exon structure, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC009336, CB153479
    Related
    ENST00000644334.1
  2. NR_110458.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC009336, BG721643, DB026150, DB070590
    Related
    ENST00000416928.8
  3. NR_110459.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate upstream promoter and differs in the 5' exon structure, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC009336, DA326484, HY138745
    Related
    ENST00000452365.2
  4. NR_110460.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate upstream promoter and differs in the 5' exon structure, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC009336, DA326484, HY138745
  5. NR_110461.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate upstream promoter and differs in the 5' exon structure, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC009336, BC030713, DA736032
  6. NR_110462.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) lacks an alternate internal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC009336, DB026150, HY018648
  7. NR_110463.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) differs in the 5' exon structure, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC009336, DB026150, DB100342
  8. NR_110464.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) differs in the 5' exon structure, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC009336, DB026150, DB100521
  9. NR_110465.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (8) uses an alternate upstream promoter and differs in the 5' exon structure, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC009336, DA398428, HY138745
    Related
    ENST00000642267.2
  10. NR_110466.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (9) uses an alternate upstream promoter and differs in the 5' exon structure, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC009336
    Related
    ENST00000643050.2
  11. NR_110467.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (11) differs in the 5' exon structure, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC009336, BC030713, DB026150, DB045673
  12. NR_110468.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (12) differs in the 5' exon structure, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC009336, DB026150, DB067012

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    176173189..176188958 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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