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LINC01122 long intergenic non-protein coding RNA 1122 [ Homo sapiens (human) ]

Gene ID: 400955, updated on 25-Jan-2022

Summary

Official Symbol
LINC01122provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1122provided by HGNC
Primary source
HGNC:HGNC:49267
See related
Ensembl:ENSG00000233723 AllianceGenome:HGNC:49267
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01122 in Genome Data Viewer
Location:
2p16.1
Exon count:
14
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (58520753..59063766)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (58747888..59290901)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1795 Neighboring gene IK cytokine, down-regulator of HLA II pseudogene Neighboring gene VISTA enhancer hs1174 Neighboring gene VISTA enhancer hs1071 Neighboring gene VISTA enhancer hs1152 Neighboring gene VISTA enhancer hs1067 Neighboring gene VISTA enhancer hs1199 Neighboring gene VISTA enhancer hs1181 Neighboring gene VISTA enhancer hs393 Neighboring gene VISTA enhancer hs975 Neighboring gene uncharacterized LOC105374754 Neighboring gene VISTA enhancer hs1119 Neighboring gene long intergenic non-protein coding RNA 1793

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
A genome-wide association study identifies three loci associated with susceptibility to uterine fibroids.
EBI GWAS Catalog
A genome-wide association study of DSM-IV cannabis dependence.
EBI GWAS Catalog
Cross-Disorder Genome-Wide Analyses Suggest a Complex Genetic Relationship Between Tourette's Syndrome and OCD.
EBI GWAS Catalog
Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.
EBI GWAS Catalog
Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.
EBI GWAS Catalog
Risk for myasthenia gravis maps to a (151) Pro→Ala change in TNIP1 and to human leukocyte antigen-B*08.
EBI GWAS Catalog

General gene information

Markers

Clone Names

  • FLJ30838, AC007092.1, DKFZp547K0718

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033873.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007077, AC007092, AK055400, AL534733, AL832565
    Related
    ENST00000452840.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    58520753..59063766
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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