LINC01122 long intergenic non-protein coding RNA 1122 [Homo sapiens (human)] - Gene

Summary

Official Symbol: LINC01122provided by HGNC
Official Full Name: long intergenic non-protein coding RNA 1122provided by HGNC
Primary source: HGNC:HGNC:49267
See related: Ensembl:ENSG00000233723 AllianceGenome:HGNC:49267
Gene type: ncRNA
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression: Low expression observed in reference dataset See more
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Genomic context

Location:: 2p16.1

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCh38.p14 (GCF_000001405.40)	2	NC_000002.12 (58520753..59063766)
RS_2024_08	current	T2T-CHM13v2.0 (GCF_009914755.1)	2	NC_060926.1 (58525587..59068770)
RS_2024_09	previous assembly	GRCh37.p13 (GCF_000001405.25)	2	NC_000002.11 (58747888..59290901)

Chromosome 2 - NC_000002.12 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
A genome-wide association study identifies three loci associated with susceptibility to uterine fibroids. EBI GWAS Catalog EBI GWAS CatalogPubMed
A genome-wide association study of DSM-IV cannabis dependence. EBI GWAS Catalog EBI GWAS CatalogPubMed
Cross-Disorder Genome-Wide Analyses Suggest a Complex Genetic Relationship Between Tourette's Syndrome and OCD. EBI GWAS Catalog EBI GWAS CatalogPubMed
Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality. EBI GWAS Catalog EBI GWAS CatalogPubMed
Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture. EBI GWAS Catalog EBI GWAS CatalogPubMed
Risk for myasthenia gravis maps to a (151) Pro&#x000e2;&#x00086;&#x00092;Ala change in TNIP1 and to human leukocyte antigen-B*08. EBI GWAS Catalog EBI GWAS CatalogPubMed

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

AFMa047zc9 (e-PCR)
- UniSTS:71206

SHGC-31346 (e-PCR)
- UniSTS:63285

D2S2183 (e-PCR), detects polymorphism
- UniSTS:30019

SHGC-152346 (e-PCR)
- UniSTS:177481

D2S2734 (e-PCR)
- UniSTS:32612

SHGC-79714 (e-PCR)
- UniSTS:101220

SHGC-79715 (e-PCR)
- UniSTS:101221

SHGC-79291 (e-PCR)
- UniSTS:102804

D2S2738 (e-PCR)
- UniSTS:11178

SHGC-78010 (e-PCR)
- UniSTS:101549

G59198 (e-PCR)
- UniSTS:136371

SHGC-77764 (e-PCR)
- UniSTS:95947

D2S1296 (e-PCR)
- UniSTS:62411

SHGC-79503 (e-PCR)
- UniSTS:103634

SHGC-77814 (e-PCR)
- UniSTS:95963

SHGC-151202 (e-PCR)
- UniSTS:173532

RH118681 (e-PCR)
- UniSTS:109293

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.