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LINC02898 long intergenic non-protein coding RNA 2898 [ Homo sapiens (human) ]

Gene ID: 400950, updated on 17-Jun-2024

Summary

Official Symbol
LINC02898provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2898provided by HGNC
Primary source
HGNC:HGNC:42966
See related
Ensembl:ENSG00000205086 AllianceGenome:HGNC:42966
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C2orf91
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See LINC02898 in Genome Data Viewer
Location:
2p21
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (41935368..41953806, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (41940852..41959295, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (42162508..42180946, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1913 Neighboring gene MPRA-validated peak3674 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11390 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15625 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:42157683-42158882 Neighboring gene uncharacterized LOC124905996 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:42164451-42165045 Neighboring gene Sharpr-MPRA regulatory region 382 Neighboring gene long intergenic non-protein coding RNA 1914 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:42166828-42167422 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:42175498-42176148 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15628 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11391 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11392 Neighboring gene VISTA enhancer hs2553 Neighboring gene uncharacterized LOC105374517 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_58491 Neighboring gene Sharpr-MPRA regulatory region 7749 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:42220647-42221044 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:42222752-42223418 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15631 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15632 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15633 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11393 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr2:42259331-42259881 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:42273538-42274041 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:42274042-42274546 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11395 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11396 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11397 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11398 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15635 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:42276763-42277264 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:42279935-42280650 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:42280651-42281365 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:42285233-42285733 Neighboring gene protein kinase domain containing, cytoplasmic

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_161189.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013480, AC104654
    Related
    ENST00000378711.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    41935368..41953806 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    41940852..41959295 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001242815.1: Suppressed sequence

    Description
    NM_001242815.1: This RefSeq was removed because currently there is support for the transcript but not for the protein.