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LINC02092 long intergenic non-protein coding RNA 2092 [ Homo sapiens (human) ]

Gene ID: 400620, updated on 29-Mar-2023

Summary

Official Symbol
LINC02092provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2092provided by HGNC
Primary source
HGNC:HGNC:52943
See related
Ensembl:ENSG00000234721 AllianceGenome:HGNC:52943
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02092 in Genome Data Viewer
Location:
17q25.1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_03 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (73786822..73800795)
RS_2023_03 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (74677609..74691579)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (71782961..71796934)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904054 Neighboring gene NANOG hESC enhancer GRCh37_chr17:71649316-71649844 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:71682138-71682716 Neighboring gene NANOG hESC enhancer GRCh37_chr17:71731954-71732466 Neighboring gene uncharacterized LOC100134391 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71763520-71764020 Neighboring gene long intergenic non-protein coding RNA 469 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71766371-71766872 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71766873-71767372 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71793394-71793894 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:71816259-71816880 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr17:71817072-71817648 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:71824013-71824522 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71825513-71826014 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71826015-71826514 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71839003-71839503 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71853558-71854172 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71854173-71854786 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71873696-71874196 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71874197-71874697 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71902449-71902950 Neighboring gene uncharacterized LOC107985081 Neighboring gene uncharacterized LOC105371888 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71969789-71970488 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr17:71970489-71971186 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71983339-71984178 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:72001833-72002829 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:72005404-72005904 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:72037304-72037804 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:72076161-72076662 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:72076663-72077162 Neighboring gene long intergenic non-protein coding RNA 2074

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040020.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125421, BC035399
    Related
    ENST00000455366.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    73786822..73800795
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    74677609..74691579
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)