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LINC00511 long intergenic non-protein coding RNA 511 [ Homo sapiens (human) ]

Gene ID: 400619, updated on 6-Sep-2021

Summary

Official Symbol
LINC00511provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 511provided by HGNC
Primary source
HGNC:HGNC:43564
See related
Ensembl:ENSG00000227036
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LCAL5; onco-lncRNA-12
Expression
Biased expression in small intestine (RPKM 1.0), duodenum (RPKM 1.0) and 9 other tissues See more
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Genomic context

See LINC00511 in Genome Data Viewer
Location:
17q24.3
Exon count:
5
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 17 NC_000017.11 (72598041..72640472, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (70594180..70636611, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2003 Neighboring gene long intergenic non-protein coding RNA 673 Neighboring gene uncharacterized LOC107985006 Neighboring gene uncharacterized LOC107985005 Neighboring gene uncharacterized LOC105371887 Neighboring gene ribosomal protein L32 pseudogene 33 Neighboring gene solute carrier family 39 member 11 Neighboring gene RN7SK pseudogene 180

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Associated conditions

Description Tests
Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.
GeneReviews: Not available
Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.
GeneReviews: Not available

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033876.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006948, AK129994
    Related
    ENST00000581549.2

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p13 Primary Assembly

    Range
    72598041..72640472 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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