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LINC00642 long intergenic non-protein coding RNA 642 [ Homo sapiens (human) ]

Gene ID: 400238, updated on 13-May-2022

Summary

Official Symbol
LINC00642provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 642provided by HGNC
Primary source
HGNC:HGNC:44293
See related
Ensembl:ENSG00000233208 AllianceGenome:HGNC:44293
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.8) See more
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Genomic context

See LINC00642 in Genome Data Viewer
Location:
14q32.11
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (90455230..90458905)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (84679941..84683616)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (90921574..90925249)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 5900 Neighboring gene calmodulin 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancers GRCh37_chr14:90920205-90920822 and GRCh37_chr14:90920823-90921440 Neighboring gene long intergenic non-protein coding RNA 2317 Neighboring gene uncharacterized LOC124903359 Neighboring gene Sharpr-MPRA regulatory region 509

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033986.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC036259, BX101323
    Related
    ENST00000442515.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    90455230..90458905
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    84679941..84683616
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)