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C11orf87 chromosome 11 open reading frame 87 [ Homo sapiens (human) ]

Gene ID: 399947, updated on 5-Aug-2018

Summary

Official Symbol
C11orf87provided by HGNC
Official Full Name
chromosome 11 open reading frame 87provided by HGNC
Primary source
HGNC:HGNC:33788
See related
Ensembl:ENSG00000185742 Vega:OTTHUMG00000166559
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NEURIM1; LOH11CR1A
Expression
Restricted expression toward brain (RPKM 7.9) See more
Orthologs

Genomic context

See C11orf87 in Genome Data Viewer
Location:
11q22.3
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 11 NC_000011.10 (109422120..109433003)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (109292570..109299893)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 654, pseudogene Neighboring gene RNA, 5S ribosomal pseudogene 349 Neighboring gene chaperonin containing TCP1 subunit 6 pseudogene 5 Neighboring gene uncharacterized LOC105369482

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ33767

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
uncharacterized protein C11orf87
Names
neuronal integral membrane protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_207645.3NP_997528.2  uncharacterized protein C11orf87 precursor

    See identical proteins and their annotated locations for NP_997528.2

    Status: VALIDATED

    Source sequence(s)
    AB096240, AK091086, AK303693, BC035798, DA221578, DA232989
    Consensus CDS
    CCDS31672.1
    UniProtKB/Swiss-Prot
    Q6NUJ2
    UniProtKB/TrEMBL
    A0A158RFU1
    Related
    ENSP00000331581.6, OTTHUMP00000233418, ENST00000327419.6, OTTHUMT00000390403
    Conserved Domains (1) summary
    pfam06365
    Location:56100
    CD34_antigen; CD34/Podocalyxin family

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p12 Primary Assembly

    Range
    109422120..109433003
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011542818.2XP_011541120.1  uncharacterized protein C11orf87 isoform X2

    See identical proteins and their annotated locations for XP_011541120.1

    UniProtKB/Swiss-Prot
    Q6NUJ2
    UniProtKB/TrEMBL
    A0A158RFU1
    Conserved Domains (1) summary
    pfam06365
    Location:56100
    CD34_antigen; CD34/Podocalyxin family
  2. XM_011542817.2XP_011541119.1  uncharacterized protein C11orf87 isoform X1

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