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LINC02687 long intergenic non-protein coding RNA 2687 [ Homo sapiens (human) ]

Gene ID: 399886, updated on 10-Oct-2023

Summary

Official Symbol
LINC02687provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2687provided by HGNC
Primary source
HGNC:HGNC:54187
See related
Ensembl:ENSG00000255267 AllianceGenome:HGNC:54187
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02687 in Genome Data Viewer
Location:
11p11.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (45371397..45388508)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (45528906..45546019)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (45392948..45410059)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:45265182-45265682 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:45288476-45288976 Neighboring gene synaptotagmin 13 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:45307287-45308073 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:45320242-45320786 Neighboring gene Sharpr-MPRA regulatory region 11350 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:45368824-45369362 Neighboring gene long intergenic non-protein coding RNA 2696 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:45400447-45400946 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:45406257-45406938 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:45432676-45433336 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:45433337-45433998 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:45444460-45444960 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:45489326-45489860 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:45489861-45490395 Neighboring gene uncharacterized LOC105376654 Neighboring gene high mobility group nucleosomal binding domain 2 pseudogene 37 Neighboring gene uncharacterized LOC105376655

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_122071.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC018716
    Related
    ENST00000528390.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    45371397..45388508
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    45528906..45546019
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)