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CCDC187 coiled-coil domain containing 187 [ Homo sapiens (human) ]

Gene ID: 399693, updated on 1-Aug-2020

Summary

Official Symbol
CCDC187provided by HGNC
Official Full Name
coiled-coil domain containing 187provided by HGNC
Primary source
HGNC:HGNC:30942
See related
Ensembl:ENSG00000260220
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 6.0), thyroid (RPKM 0.9) and 1 other tissue See more
Orthologs

Genomic context

See CCDC187 in Genome Data Viewer
Location:
9q34.3
Exon count:
27
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (136249973..136306901, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 9 (PATCHES) NW_003315926.1 (36342..59027, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene LIM homeobox 3 Neighboring gene quiescin sulfhydryl oxidase 2 Neighboring gene 9q34.3 QSOX2 distal recombination region Neighboring gene uncharacterized LOC26102 Neighboring gene G protein signaling modulator 1 Neighboring gene DNL-type zinc finger

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • MGC50722

Gene Ontology Provided by GOA

Function Evidence Code Pubs
microtubule binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
microtubule anchoring IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
centrosome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
coiled-coil domain-containing protein 187

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001291516.1NP_001278445.1  coiled-coil domain-containing protein 187 isoform 1

    Status: VALIDATED

    Source sequence(s)
    FP326719
    Consensus CDS
    CCDS78462.1
    UniProtKB/TrEMBL
    A0A075B733
    Related
    ENSP00000456543.1, ENST00000569961.5
  2. NM_001378188.1NP_001365117.1  coiled-coil domain-containing protein 187 isoform 2

    Status: VALIDATED

    Source sequence(s)
    CR392000, FP326719
    Related
    ENSP00000492326.1, ENST00000638797.1

RNA

  1. NR_111982.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    FP326719
    Related
    ENST00000563590.2

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20200522

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    136249973..136306901 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011518679.2XP_011516981.1  coiled-coil domain-containing protein 187 isoform X1

  2. XM_011518681.2XP_011516983.1  coiled-coil domain-containing protein 187 isoform X2

  3. XM_011518684.2XP_011516986.1  coiled-coil domain-containing protein 187 isoform X4

  4. XM_011518683.2XP_011516985.1  coiled-coil domain-containing protein 187 isoform X3

    UniProtKB/Swiss-Prot
    A0A096LP49
    Related
    ENSP00000485393.1, ENST00000624277.3

RNA

  1. XR_929795.2 RNA Sequence

  2. XR_929798.2 RNA Sequence

  3. XR_929797.2 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001378118.1: Suppressed sequence

    Description
    NM_001378118.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
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