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ARL13A ADP ribosylation factor like GTPase 13A [ Homo sapiens (human) ]

Gene ID: 392509, updated on 23-Nov-2021

Summary

Official Symbol
ARL13Aprovided by HGNC
Official Full Name
ADP ribosylation factor like GTPase 13Aprovided by HGNC
Primary source
HGNC:HGNC:31709
See related
Ensembl:ENSG00000174225
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ARL13; dJ341D10.2
Expression
Biased expression in testis (RPKM 2.4), skin (RPKM 0.2) and 1 other tissue See more
Orthologs
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Genomic context

See ARL13A in Genome Data Viewer
Location:
Xq22.1
Exon count:
9
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (100969011..100990831)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (100224697..100245820)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene XK related X-linked Neighboring gene NSA2 pseudogene 3 Neighboring gene CSGALNACT2 pseudogene 1 Neighboring gene tRNA methyltransferase 2 homolog B Neighboring gene transmembrane protein 35A Neighboring gene centromere protein I

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in non-motile cilium assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in receptor localization to non-motile cilium IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in ciliary membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in motile cilium IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in non-motile cilium IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
ADP-ribosylation factor-like protein 13A
Names
ADP-ribosylation factor-like 13
ADP-ribosylation factor-like 13A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001162491.2NP_001155963.1  ADP-ribosylation factor-like protein 13A

    See identical proteins and their annotated locations for NP_001155963.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) encodes the functional protein.
    Source sequence(s)
    AK301813, AW118931, BC140808
    Consensus CDS
    CCDS55463.1
    UniProtKB/Swiss-Prot
    Q5H913
    Related
    ENSP00000398637.2, ENST00000450049.7
    Conserved Domains (1) summary
    cd04161
    Location:23189
    Arl2l1_Arl13_like; Arl2-like protein 1 (Arl2l1) and Arl13

RNA

  1. NR_103708.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs at the 3' end compared to variant 3. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 3, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AK301813, AW118931
  2. NR_103709.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) differs at the 3' end compared to variant 3. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 3, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AK301813, AW118931, DC426731
    Related
    ENST00000450457.6

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    100969011..100990831
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011530950.2XP_011529252.1  ADP-ribosylation factor-like protein 13A isoform X1

    Conserved Domains (1) summary
    cd04161
    Location:23189
    Arl2l1_Arl13_like; Arl2-like protein 1 (Arl2l1) and Arl13
  2. XM_011530951.2XP_011529253.1  ADP-ribosylation factor-like protein 13A isoform X2

    Conserved Domains (1) summary
    cl21455
    Location:23126
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
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