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CXXC1P1 CXXC finger protein 1 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 392459, updated on 10-Oct-2023

Summary

Official Symbol
CXXC1P1provided by HGNC
Official Full Name
CXXC finger protein 1 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:27864
See related
Ensembl:ENSG00000290641 AllianceGenome:HGNC:27864
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CXorf25; NCRNA00236
Expression
Low expression observed in reference dataset See more
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Genomic context

See CXXC1P1 in Genome Data Viewer
Location:
Xp11.23
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (47707191..47736628)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (47117092..47146532)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (47566590..47596027)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene CRISPRi-FlowFISH-validated PLP2 regulatory element 2 Neighboring gene ETS transcription factor ELK1 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:47517923-47518426 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:47518427-47518928 Neighboring gene CRISPRi-validated cis-regulatory element chrX.881 Neighboring gene UXT antisense RNA 1 Neighboring gene ubiquitously expressed prefoldin like chaperone Neighboring gene SMS pseudogene 1 Neighboring gene zinc finger protein 585A pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29595 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29596 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29597 Neighboring gene zinc finger protein 484 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_028296.1 RefSeqGene

    Range
    5001..34438
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_033924.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK094108, AL009172
    Related
    ENST00000483225.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    47707191..47736628
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    47117092..47146532
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)