Format

Send to:

Choose Destination

SMPD5 sphingomyelin phosphodiesterase 5 (pseudogene) [ Homo sapiens (human) ]

Gene ID: 392275, updated on 19-Jun-2020

Summary

Official Symbol
SMPD5provided by HGNC
Official Full Name
sphingomyelin phosphodiesterase 5 (pseudogene)provided by HGNC
Primary source
HGNC:HGNC:52275
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MA-nSMase
Expression
Low expression observed in reference dataset See more
Orthologs

Genomic context

See SMPD5 in Genome Data Viewer
Location:
8q24.3
Exon count:
2
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 8 NC_000008.11 (144049398..144050059)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (145102853..145106170)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene glutamate ionotropic receptor NMDA type subunit associated protein 1 Neighboring gene spermatogenesis and centriole associated 1 Neighboring gene 5-oxoprolinase, ATP-hydrolysing Neighboring gene microRNA 6846 Neighboring gene exosome component 4 Neighboring gene microRNA 6847

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Other Names

  • mitochondria-associated nSMase
  • sphingomyelin phosphodiesterase 5

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_158554.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC109322

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p13 Primary Assembly

    Range
    144049398..144050059
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center