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C9orf153 chromosome 9 open reading frame 153 [ Homo sapiens (human) ]

Gene ID: 389766, updated on 23-Nov-2021

Summary

Official Symbol
C9orf153provided by HGNC
Official Full Name
chromosome 9 open reading frame 153provided by HGNC
Primary source
HGNC:HGNC:31456
See related
Ensembl:ENSG00000187753
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
bA507D14.1
Expression
Restricted expression toward testis (RPKM 6.4) See more
Orthologs
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Genomic context

See C9orf153 in Genome Data Viewer
Location:
9q21.33
Exon count:
6
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (86220265..86259657, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (88835346..88874572, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene N-alpha-acetyltransferase 35, NatC auxiliary subunit Neighboring gene golgi membrane protein 1 Neighboring gene uncharacterized LOC101927623 Neighboring gene chromosome 4 open reading frame 3 pseudogene Neighboring gene RN7SK pseudogene 264 Neighboring gene iron-sulfur cluster assembly 1 Neighboring gene terminal uridylyl transferase 7

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
uncharacterized protein C9orf153

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001276366.4NP_001263295.1  uncharacterized protein C9orf153

    See identical proteins and their annotated locations for NP_001263295.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon in the 5' UTR compared to variant 1. Variants 1, 2, and 3 all encode the same protein.
    Source sequence(s)
    AL137849
    Consensus CDS
    CCDS35055.2
    UniProtKB/Swiss-Prot
    Q5TBE3
    Related
    ENSP00000344865.2, ENST00000339137.7
  2. NM_001276367.4NP_001263296.1  uncharacterized protein C9orf153

    See identical proteins and their annotated locations for NP_001263296.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2, and 3 all encode the same protein.
    Source sequence(s)
    AL137849
    Consensus CDS
    CCDS35055.2
    UniProtKB/Swiss-Prot
    Q5TBE3
  3. NM_001276368.4NP_001263297.1  uncharacterized protein C9orf153

    See identical proteins and their annotated locations for NP_001263297.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has an alternate exon in place of the first exon in the 5' UTR compared to variant 1. Variants 1, 2, and 3 all encode the same protein.
    Source sequence(s)
    AL137849
    Consensus CDS
    CCDS35055.2
    UniProtKB/Swiss-Prot
    Q5TBE3

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    86220265..86259657 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001010907.1: Suppressed sequence

    Description
    NM_001010907.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
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