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ALKAL1 ALK and LTK ligand 1 [ Homo sapiens (human) ]

Gene ID: 389658, updated on 11-Jun-2021

Summary

Official Symbol
ALKAL1provided by HGNC
Official Full Name
ALK and LTK ligand 1provided by HGNC
Primary source
HGNC:HGNC:33775
See related
Ensembl:ENSG00000196711
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
AUGA; AUGB; FAM150A; UNQ9433
Expression
Biased expression in gall bladder (RPKM 1.3), thyroid (RPKM 1.1) and 7 other tissues See more
Orthologs
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Genomic context

See ALKAL1 in Genome Data Viewer
Location:
8q11.23
Exon count:
5
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 8 NC_000008.11 (52534037..52565430, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (53446597..53477990, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene ST18 C2H2C-type zinc finger transcription factor Neighboring gene ribosomal protein L34 pseudogene 17 Neighboring gene ST18-FAM150A intergenic CAGE-defined low expression enhancer Neighboring gene RB1 inducible coiled-coil 1 Neighboring gene uncharacterized LOC105375835

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • MGC163513, MGC163515

General protein information

Preferred Names
ALK and LTK ligand 1
Names
AUG-beta
RPLK9433
augmentor beta
augmentor-alpha
family with sequence similarity 150 member A
protein FAM150A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_207413.4NP_997296.1  ALK and LTK ligand 1 precursor

    See identical proteins and their annotated locations for NP_997296.1

    Status: VALIDATED

    Source sequence(s)
    AC013650, AI858920, AY358213, BP423106
    Consensus CDS
    CCDS6150.1
    UniProtKB/Swiss-Prot
    Q6UXT8
    Related
    ENSP00000351345.4, ENST00000358543.9
    Conserved Domains (1) summary
    pfam15129
    Location:58128
    FAM150; FAM150 family

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p13 Primary Assembly

    Range
    52534037..52565430 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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