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IQCF5 IQ motif containing F5 [ Homo sapiens (human) ]

Gene ID: 389124, updated on 5-Jan-2022

Summary

Official Symbol
IQCF5provided by HGNC
Official Full Name
IQ motif containing F5provided by HGNC
Primary source
HGNC:HGNC:35159
See related
Ensembl:ENSG00000214681
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to enable calmodulin binding activity. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Restricted expression toward testis (RPKM 19.7) See more
Orthologs
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Genomic context

See IQCF5 in Genome Data Viewer
Location:
3p21.2
Exon count:
2
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (51873721..51875601, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (51907737..51909617, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene IQ motif containing F2 Neighboring gene RNA, 7SL, cytoplasmic 504, pseudogene Neighboring gene IQCF5 antisense RNA 1 Neighboring gene IQ motif containing F1 Neighboring gene ribosomal RNA processing 9, U3 small nucleolar RNA binding protein

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables calmodulin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
IQ domain-containing protein F5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145059.2NP_001138531.1  IQ domain-containing protein F5

    See identical proteins and their annotated locations for NP_001138531.1

    Status: VALIDATED

    Source sequence(s)
    AC097636, AW138546, BX106781
    Consensus CDS
    CCDS46838.1
    UniProtKB/Swiss-Prot
    A8MTL0
    Related
    ENSP00000394653.1, ENST00000446461.2

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    51873721..51875601 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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