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C2orf80 chromosome 2 open reading frame 80 [ Homo sapiens (human) ]

Gene ID: 389073, updated on 5-Aug-2022

Summary

Official Symbol
C2orf80provided by HGNC
Official Full Name
chromosome 2 open reading frame 80provided by HGNC
Primary source
HGNC:HGNC:34352
See related
Ensembl:ENSG00000188674 MIM:615536; AllianceGenome:HGNC:34352
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GONDA1
Expression
Restricted expression toward brain (RPKM 8.9) See more
Orthologs
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Genomic context

See C2orf80 in Genome Data Viewer
Location:
2q33.3
Exon count:
11
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (208165347..208190030, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (208645334..208670136, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (209030071..209054754, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100507443 Neighboring gene crystallin gamma B Neighboring gene crystallin gamma A Neighboring gene ribosomal protein SA pseudogene 27 Neighboring gene TPT1 pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

General protein information

Preferred Names
uncharacterized protein C2orf80
Names
gonad development associated 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001099334.3NP_001092804.2  uncharacterized protein C2orf80

    Status: VALIDATED

    Source sequence(s)
    AC016697
    Consensus CDS
    CCDS42809.1
    UniProtKB/Swiss-Prot
    A6NKZ3
    Related
    ENSP00000343171.4, ENST00000341287.9

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    208165347..208190030 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017004074.2XP_016859563.1  uncharacterized protein C2orf80 isoform X2

  2. XM_017004076.2XP_016859565.1  uncharacterized protein C2orf80 isoform X4

    UniProtKB/Swiss-Prot
    A6NKZ3, Q0P641
  3. XM_047444270.1XP_047300226.1  uncharacterized protein C2orf80 isoform X5

  4. XM_047444267.1XP_047300223.1  uncharacterized protein C2orf80 isoform X1

  5. XM_047444268.1XP_047300224.1  uncharacterized protein C2orf80 isoform X3

    Related
    ENSP00000405393.1, ENST00000451346.5
  6. XM_047444271.1XP_047300227.1  uncharacterized protein C2orf80 isoform X6

  7. XM_047444272.1XP_047300228.1  uncharacterized protein C2orf80 isoform X7

    Related
    ENSP00000389385.1, ENST00000451342.5

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    208645334..208670136 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)