U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SNHG17 small nucleolar RNA host gene 17 [ Homo sapiens (human) ]

Gene ID: 388796, updated on 25-Dec-2023

Summary

Official Symbol
SNHG17provided by HGNC
Official Full Name
small nucleolar RNA host gene 17provided by HGNC
Primary source
HGNC:HGNC:48600
See related
Ensembl:ENSG00000196756 AllianceGenome:HGNC:48600
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in bone marrow (RPKM 12.9), ovary (RPKM 5.2) and 25 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See SNHG17 in Genome Data Viewer
Location:
20q11.23
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (38420588..38435328, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (40148174..40162915, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (37049235..37064020, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:36982312-36982872 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:36982873-36983432 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:36986777-36987278 Neighboring gene lipopolysaccharide binding protein Neighboring gene ReSE screen-validated silencer GRCh37_chr20:36991245-36991414 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:37017902-37018103 Neighboring gene uncharacterized LOC124904901 Neighboring gene small nucleolar RNA SNORA71 Neighboring gene Sharpr-MPRA regulatory region 13566 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:37059106-37059606 Neighboring gene uncharacterized LOC124904958 Neighboring gene small nucleolar RNA, H/ACA box 71B Neighboring gene small nucleolar RNA, H/ACA box 71A Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17856 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17857 Neighboring gene small nucleolar RNA, H/ACA box 71C Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17858 Neighboring gene small nucleolar RNA, H/ACA box 71D Neighboring gene small nucleolar RNA SNORA71 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17859 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:37076132-37076686 Neighboring gene small nucleolar RNA, H/ACA box 71E Neighboring gene small nucleolar RNA host gene 11

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Other Names

  • small nucleolar RNA host gene 17 (non-protein coding)

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015366.6 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000690361.1
  2. NR_027241.4 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000660885.2
  3. NR_152753.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
  4. NR_152754.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000665735.2
  5. NR_152755.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000665233.3
  6. NR_152756.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000663540.3
  7. NR_152757.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000689414.2
  8. NR_152758.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000666268.2
  9. NR_152759.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
  10. NR_152760.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
  11. NR_152761.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000456953.8
  12. NR_152762.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000654183.2
  13. NR_152763.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
  14. NR_152764.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000417578.8
  15. NR_185920.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000658488.3
  16. NR_185921.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
  17. NR_185922.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000662213.1
  18. NR_185923.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
  19. NR_185924.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000657216.2
  20. NR_185925.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000651115.2
  21. NR_185926.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000653697.1
  22. NR_185927.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
  23. NR_185928.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000701507.1
  24. NR_185929.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000687532.2
  25. NR_185930.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
  26. NR_185931.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000655520.2
  27. NR_185932.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000666419.1
  28. NR_185934.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000701521.1
  29. NR_185935.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000701793.1
  30. NR_185936.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000671249.1
  31. NR_185937.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000664073.2
  32. NR_185938.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000701736.1
  33. NR_185939.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000689917.2
  34. NR_185940.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000666331.1
  35. NR_185941.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000658905.1
  36. NR_185942.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
  37. NR_185943.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000665181.1
  38. NR_185944.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000692262.1
  39. NR_185945.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
  40. NR_185946.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000661252.1
  41. NR_185947.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000660558.2
  42. NR_185948.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000669480.1
  43. NR_185949.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
  44. NR_185950.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
  45. NR_185951.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000668054.2
  46. NR_185952.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
  47. NR_185953.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
  48. NR_185954.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
  49. NR_185955.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000687490.1
  50. NR_185956.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
  51. NR_185957.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000436764.8
  52. NR_185958.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000664636.1
  53. NR_185959.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000669137.1
  54. NR_185960.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000657843.1
  55. NR_185961.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
  56. NR_185962.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
  57. NR_185963.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000670051.1
  58. NR_185964.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000669033.2
  59. NR_185965.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000656320.1
  60. NR_185966.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
  61. NR_185967.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000690441.1
  62. NR_185968.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
  63. NR_185969.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
  64. NR_185970.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
  65. NR_185972.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
  66. NR_185973.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
  67. NR_185974.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000413755.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    38420588..38435328 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    40148174..40162915 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)