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SNHG17 small nucleolar RNA host gene 17 [ Homo sapiens (human) ]

Gene ID: 388796, updated on 6-Sep-2021

Summary

Official Symbol
SNHG17provided by HGNC
Official Full Name
small nucleolar RNA host gene 17provided by HGNC
Primary source
HGNC:HGNC:48600
See related
Ensembl:ENSG00000196756
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in bone marrow (RPKM 12.9), ovary (RPKM 5.2) and 25 other tissues See more
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Genomic context

See SNHG17 in Genome Data Viewer
Location:
20q11.23
Exon count:
10
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 20 NC_000020.11 (38420588..38435377, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (37049235..37064020, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene bactericidal permeability increasing protein Neighboring gene lipopolysaccharide binding protein Neighboring gene Sharpr-MPRA regulatory region 13566 Neighboring gene small nucleolar RNA, H/ACA box 71B Neighboring gene small nucleolar RNA, H/ACA box 71A Neighboring gene small nucleolar RNA, H/ACA box 71C Neighboring gene small nucleolar RNA, H/ACA box 71D Neighboring gene small nucleolar RNA, H/ACA box 71E Neighboring gene small nucleolar RNA, H/ACA box 60 Neighboring gene small nucleolar RNA host gene 11

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Other Names

  • small nucleolar RNA host gene 17 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015366.5 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095, DB264878
    Related
    ENST00000658488.1
  2. NR_027241.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095, BC032119, BC052370, BM678826, BM714185, DB264878
    Related
    ENST00000660885.1
  3. NR_152753.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
  4. NR_152754.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000665735.1
  5. NR_152755.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000665233.1
  6. NR_152756.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BM678826, DB264878, KY680245
    Related
    ENST00000663540.1
  7. NR_152757.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000660558.1
  8. NR_152758.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BI522537, BM678826, DB264878
    Related
    ENST00000666268.1
  9. NR_152759.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000658905.1
  10. NR_152760.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000657216.1
  11. NR_152761.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000456953.6
  12. NR_152762.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095, BC052370, BM678826, DB264878
    Related
    ENST00000654183.1
  13. NR_152763.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
  14. NR_152764.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095, BG481329, BM678826, DB264878
    Related
    ENST00000417578.6

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p13 Primary Assembly

    Range
    38420588..38435377 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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