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CD164L2 CD164 molecule like 2 [ Homo sapiens (human) ]

Gene ID: 388611, updated on 23-Nov-2021

Summary

Official Symbol
CD164L2provided by HGNC
Official Full Name
CD164 molecule like 2provided by HGNC
Primary source
HGNC:HGNC:32043
See related
Ensembl:ENSG00000174950
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
UNQ6122; EAPG6122
Expression
Biased expression in skin (RPKM 3.1), esophagus (RPKM 2.8) and 5 other tissues See more
Orthologs
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Genomic context

See CD164L2 in Genome Data Viewer
Location:
1p36.11
Exon count:
7
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (27379171..27383333, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (27705666..27709823, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase kinase 6 Neighboring gene ficolin 3 Neighboring gene Sharpr-MPRA regulatory region 8314 Neighboring gene G protein-coupled receptor 3 Neighboring gene WASP family member 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
is_active_in cytoplasmic vesicle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
CD164 sialomucin-like 2 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001330448.1NP_001317377.1  CD164 sialomucin-like 2 protein isoform 1 precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    FO393419
    Consensus CDS
    CCDS81287.1
    Related
    ENSP00000363142.1, ENST00000374030.3
    Conserved Domains (1) summary
    pfam05283
    Location:54173
    MGC-24; Multi-glycosylated core protein 24 (MGC-24), sialomucin
  2. NM_207397.5NP_997280.2  CD164 sialomucin-like 2 protein isoform 2 precursor

    See identical proteins and their annotated locations for NP_997280.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) retains an intron in the 3' end compared to variant 1. The resulting isoform (2) is 1 aa shorter at the C-terminus compared to isoform 1.
    Source sequence(s)
    AY358761, DB114521, FO393419
    Consensus CDS
    CCDS302.1
    UniProtKB/Swiss-Prot
    Q6UWJ8
    Related
    ENSP00000363139.3, ENST00000374027.7
    Conserved Domains (1) summary
    pfam05283
    Location:54173
    MGC-24; Multi-glycosylated core protein 24 (MGC-24), sialomucin

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    27379171..27383333 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011541441.1XP_011539743.1  CD164 sialomucin-like 2 protein isoform X1

    See identical proteins and their annotated locations for XP_011539743.1

    Conserved Domains (1) summary
    pfam05283
    Location:54173
    MGC-24; Multi-glycosylated core protein 24 (MGC-24), sialomucin

RNA

  1. XR_241190.3 RNA Sequence

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