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TMEM238 transmembrane protein 238 [ Homo sapiens (human) ]

Gene ID: 388564, updated on 22-Sep-2022

Summary

Official Symbol
TMEM238provided by HGNC
Official Full Name
transmembrane protein 238provided by HGNC
Primary source
HGNC:HGNC:40042
See related
Ensembl:ENSG00000233493 AllianceGenome:HGNC:40042
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in colon (RPKM 11.7), stomach (RPKM 5.7) and 9 other tissues See more
Orthologs
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Genomic context

See TMEM238 in Genome Data Viewer
Location:
19q13.42
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (55379244..55384292, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (58474730..58479780, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (55890612..55895660, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene CRISPRi-validated cis-regulatory element chr19.6204 Neighboring gene transmembrane protein 190 Neighboring gene ribosomal protein L28 Neighboring gene microRNA 6805 Neighboring gene ubiquitin conjugating enzyme E2 S Neighboring gene small nucleolar RNA, C/D box 157

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001190764.2NP_001177693.1  transmembrane protein 238

    See identical proteins and their annotated locations for NP_001177693.1

    Status: VALIDATED

    Source sequence(s)
    AC020922, BC052596
    Consensus CDS
    CCDS54323.1
    UniProtKB/Swiss-Prot
    C9JI98
    Related
    ENSP00000416154.2, ENST00000444469.4
    Conserved Domains (1) summary
    pfam15125
    Location:32100
    TMEM238; TMEM238 protein family

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    55379244..55384292 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    58474730..58479780 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)