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ZNF788P zinc finger family member 788, pseudogene [ Homo sapiens (human) ]

Gene ID: 388507, updated on 5-Jan-2022

Summary

Official Symbol
ZNF788Pprovided by HGNC
Official Full Name
zinc finger family member 788, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:33112
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ZNF788
Summary
Predicted to be involved in regulation of transcription, DNA-templated. Located in nucleus. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Ubiquitous expression in testis (RPKM 2.1), kidney (RPKM 1.5) and 24 other tissues See more
Orthologs
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Genomic context

See ZNF788P in Genome Data Viewer
Location:
19p13.2
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (12092297..12114753)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (12203112..12225568)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene ZNF433 and ZNF878 antisense RNA 1 Neighboring gene zinc finger protein 878 Neighboring gene RNA, 5S ribosomal pseudogene 466 Neighboring gene zinc finger protein 844 Neighboring gene ribosomal L24 domain containing 1 pseudogene 8 Neighboring gene RNA, 5S ribosomal pseudogene 467 Neighboring gene uncharacterized LOC105372275 Neighboring gene ZNF625-ZNF20 readthrough (NMD candidate) Neighboring gene zinc finger protein 20 Neighboring gene ribosomal protein L17 pseudogene 47

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Common genetic variation and performance on standardized cognitive tests.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Other Names

  • KRAB domain-containing protein ZNF788
  • putative KRAB domain-containing protein ZNF788
  • zinc finger protein 788

Clone Names

  • FLJ46419, FLJ46867

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleus HDA PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_171037.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022415
  2. NR_171038.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022415
  3. NR_171039.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022415
  4. NR_171040.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022415
  5. NR_171041.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022415
  6. NR_171042.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022415
  7. NR_171043.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022415

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    12092297..12114753
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001004314.2: Suppressed sequence

    Description
    NM_001004314.2: This RefSeq was suppressed temporarily based on the calculation that the annotated protein was shorter than a protein or proteins from a putative ortholog.
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