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C10orf143 chromosome 10 open reading frame 143 [ Homo sapiens (human) ]

Gene ID: 387723, updated on 5-Aug-2022

Summary

Official Symbol
C10orf143provided by HGNC
Official Full Name
chromosome 10 open reading frame 143provided by HGNC
Primary source
HGNC:HGNC:48677
See related
Ensembl:ENSG00000237489 AllianceGenome:HGNC:48677
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC00959
Expression
Ubiquitous expression in thyroid (RPKM 1.2), prostate (RPKM 1.0) and 25 other tissues See more
Orthologs
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Genomic context

See C10orf143 in Genome Data Viewer
Location:
10q26.3
Exon count:
11
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (130035125..130110830, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (130991227..131039821, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (131862160..131909094, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene EBF transcription factor 3 Neighboring gene EBF3 antisense RNA 1 Neighboring gene VISTA enhancer hs232 Neighboring gene uncharacterized LOC102724883 Neighboring gene uncharacterized LOC124902560 Neighboring gene uncharacterized LOC105378561 Neighboring gene CTAGE family member 7, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

General protein information

Preferred Names
uncharacterized protein C10orf143
Names
long intergenic non-protein coding RNA 959

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001355042.2NP_001341971.1  uncharacterized protein C10orf143

    Status: VALIDATED

    Source sequence(s)
    AL139123
    Consensus CDS
    CCDS86157.1
    UniProtKB/Swiss-Prot
    A0A1B0GUT2
    Related
    ENSP00000490233.1, ENST00000637128.2

RNA

  1. NR_034125.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK094118, AL139123, AW135007, EU250747
    Related
    ENST00000647406.1
  2. NR_149170.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139123

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    130035125..130110830 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024448009.2XP_024303777.1  uncharacterized protein C10orf143 isoform X3

    Related
    ENSP00000496273.1, ENST00000643056.1
  2. XM_024448007.2XP_024303775.1  uncharacterized protein C10orf143 isoform X1

  3. XM_024448008.2XP_024303776.1  uncharacterized protein C10orf143 isoform X2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    130991227..131039821 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)