U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Lockd lncRNA downstream of Cdkn1b [ Mus musculus (house mouse) ]

Gene ID: 381822, updated on 8-Feb-2024

Summary

Official Symbol
Lockdprovided by MGI
Official Full Name
lncRNA downstream of Cdkn1bprovided by MGI
Primary source
MGI:MGI:1915081
See related
Ensembl:ENSMUSG00000098318 AllianceGenome:MGI:1915081
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Droc; 1190002F15Rik
Expression
Biased expression in liver E14 (RPKM 30.8), CNS E11.5 (RPKM 27.1) and 10 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Lockd in Genome Data Viewer
Location:
6; 6 G1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (134906055..134928681)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (134929092..134951718)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 19 Neighboring gene RIKEN cDNA 2810454H06 gene Neighboring gene CRISPRi-validated cis-regulatory element for Cdkn1b and Gpr19 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:134848417-134848526 Neighboring gene STARR-positive B cell enhancer ABC_E285 Neighboring gene cyclin dependent kinase inhibitor 1B Neighboring gene STARR-positive B cell enhancer mm9_chr6:134897243-134897544 Neighboring gene STARR-positive B cell enhancer mm9_chr6:134931598-134931898 Neighboring gene predicted gene, 36428 Neighboring gene apolipoprotein L domain containing 1 Neighboring gene STARR-positive B cell enhancer ABC_E865 Neighboring gene DEAD box helicase 47

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Other Names

  • downstream lncRNA of Cdkn1b

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037955.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site at the 5' end compared to variant 1.
    Source sequence(s)
    AI121041, AK004447
  2. NR_037956.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AI121041, AK004447
    Related
    ENSMUST00000184504.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    134906055..134928681
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)