U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

2610005L07Rik RIKEN cDNA 2610005L07 gene [ Mus musculus (house mouse) ]

Gene ID: 381598, updated on 8-Feb-2024

Summary

Official Symbol
2610005L07Rikprovided by MGI
Official Full Name
RIKEN cDNA 2610005L07 geneprovided by MGI
Gene description
cadherin 11 pseudogene
Primary source
MGI:MGI:1914283
See related
Ensembl:ENSMUSG00000121345 AllianceGenome:MGI:1914283
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2810038F24Rik; 6720476A01Rik
Expression
Ubiquitous expression in CNS E11.5 (RPKM 25.7), limb E14.5 (RPKM 25.6) and 28 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See 2610005L07Rik in Genome Data Viewer
Location:
8 A1.3; 8 10.35 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (20016466..20055498)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (20385782..20424814, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 53404 Neighboring gene STARR-positive B cell enhancer ABC_E3770 Neighboring gene STARR-positive B cell enhancer mm9_chr8:19798473-19798774 Neighboring gene STARR-positive B cell enhancer mm9_chr8:19799661-19799962 Neighboring gene NSFL1 (p97) cofactor (p47) pseudogene Neighboring gene NSFL1 (p97) cofactor (p47) pseudogene Neighboring gene STARR-seq mESC enhancer starr_20880 Neighboring gene ribosomal protein S7 pseudogene Neighboring gene STARR-seq mESC enhancer starr_20877 Neighboring gene POTE ankyrin domain family member 3A

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028428.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK131627
    Related
    ENSMUST00000140111.8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    20016466..20055498
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001024708.1: Suppressed sequence

    Description
    NM_001024708.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
  2. NM_001033456.1: Suppressed sequence

    Description
    NM_001033456.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.