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4930592C13Rik RIKEN cDNA 4930592C13 gene [ Mus musculus (house mouse) ]

Gene ID: 381498, updated on 8-Feb-2024

Summary

Official Symbol
4930592C13Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930592C13 geneprovided by MGI
Primary source
MGI:MGI:2686503
See related
Ensembl:ENSMUSG00000105834 AllianceGenome:MGI:2686503
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm1657; Gm43159
Expression
Biased expression in testis adult (RPKM 8.4) and subcutaneous fat pad adult (RPKM 0.2) See more
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Genomic context

Location:
3; 3 H4
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (157233152..157239727, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (157527515..157534090, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 23379 Neighboring gene STARR-seq mESC enhancer starr_09370 Neighboring gene predicted gene 5983 Neighboring gene STARR-seq mESC enhancer starr_09371 Neighboring gene zinc finger, RAN-binding domain containing 2 Neighboring gene STARR-seq mESC enhancer starr_09372 Neighboring gene microRNA 186 Neighboring gene STARR-positive B cell enhancer mm9_chr3:157228208-157228509 Neighboring gene prostaglandin E receptor 3 (subtype EP3) Neighboring gene STARR-seq mESC enhancer starr_09373 Neighboring gene STARR-seq mESC enhancer starr_09375 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:157279973-157280264

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_152231.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK076987
    Related
    ENSMUST00000196791.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    157233152..157239727 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)