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Mirt1 myocardial infarction associated transcript 1 [ Mus musculus (house mouse) ]

Gene ID: 381232, updated on 8-Feb-2024

Summary

Official Symbol
Mirt1provided by MGI
Official Full Name
myocardial infarction associated transcript 1provided by MGI
Primary source
MGI:MGI:1922001
See related
AllianceGenome:MGI:1922001
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm10758; 4833407H14Rik; 5430437C04Rik; 5830416P10Rik
Summary
Acts upstream of or within response to wounding. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in thymus adult (RPKM 2.5), spleen adult (RPKM 2.2) and 13 other tissues See more
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Genomic context

See Mirt1 in Genome Data Viewer
Location:
19 D2; 19 47.8 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (53429643..53453227, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (53441212..53464796, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E783 Neighboring gene predicted gene, 30541 Neighboring gene MAX interactor 1, dimerization protein Neighboring gene STARR-seq mESC enhancer starr_46448 Neighboring gene survival motor neuron domain containing 1 Neighboring gene VISTA enhancer mm1351 Neighboring gene STARR-positive B cell enhancer ABC_E4292 Neighboring gene STARR-positive B cell enhancer ABC_E1980 Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:53499127-53499376 Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:53515061-53515299 Neighboring gene STARR-positive B cell enhancer ABC_E5711 Neighboring gene STARR-seq mESC enhancer starr_46454 Neighboring gene RIKEN cDNA 4833407H14 gene Neighboring gene STARR-seq mESC enhancer starr_46456 Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:53539230-53539416 Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:53577410-53577623 Neighboring gene predicted gene, 30826 Neighboring gene STARR-positive B cell enhancer mm9_chr19:53603336-53603637 Neighboring gene dual specificity phosphatase 5

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028427.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC123702

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    53429643..53453227 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)