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C3orf62 chromosome 3 open reading frame 62 [ Homo sapiens (human) ]

Gene ID: 375341, updated on 7-Jun-2020

Summary

Official Symbol
C3orf62provided by HGNC
Official Full Name
chromosome 3 open reading frame 62provided by HGNC
Primary source
HGNC:HGNC:24771
See related
Ensembl:ENSG00000188315
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in testis (RPKM 4.1), bone marrow (RPKM 2.7) and 24 other tissues See more
Orthologs

Genomic context

See C3orf62 in Genome Data Viewer
Location:
3p21.31
Exon count:
3
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (49268596..49277232, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (49306030..49314864, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene chromosome 3 open reading frame 84 Neighboring gene interactor of HORMAD1 1 Neighboring gene microRNA 4271 Neighboring gene ubiquitin specific peptidase 4 Neighboring gene Sjoegren syndrome nuclear autoantigen 1 homolog Neighboring gene GATA motif-containing MPRA enhancer 295

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ43654, MGC23381, MGC61663, MGC62079

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
uncharacterized protein C3orf62

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_198562.3NP_940964.1  uncharacterized protein C3orf62

    See identical proteins and their annotated locations for NP_940964.1

    Status: VALIDATED

    Source sequence(s)
    AC121247, AK056215, BC023586, BC053629
    Consensus CDS
    CCDS2792.1
    UniProtKB/Swiss-Prot
    Q6ZUJ4
    Related
    ENSP00000341139.3, ENST00000343010.8
    Conserved Domains (1) summary
    pfam15830
    Location:13262
    DUF4712; Domain of unknown function (DUF4712)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    49268596..49277232 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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