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LINC01116 long intergenic non-protein coding RNA 1116 [ Homo sapiens (human) ]

Gene ID: 375295, updated on 10-Dec-2024

Summary

Official Symbol
LINC01116provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1116provided by HGNC
Primary source
HGNC:HGNC:49259
See related
Ensembl:ENSG00000163364 AllianceGenome:HGNC:49259
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TALNEC2
Expression
Broad expression in ovary (RPKM 6.9), adrenal (RPKM 5.0) and 15 other tissues See more
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Genomic context

See LINC01116 in Genome Data Viewer
Location:
2q31.1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (176611437..176637609, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (177093539..177119723, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (177476165..177502337, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124907910 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:177453489-177454688 Neighboring gene microRNA 1246 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:177485641-177486840 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12138 Neighboring gene VISTA enhancer hs248 Neighboring gene long intergenic non-protein coding RNA 1117 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12139 Neighboring gene RNA, U6atac small nuclear 14, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Other Names

  • Tumor associated lncRNA expressed in chromosome 2

Clone Names

  • AC017048.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040001.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC017048, KF456744
    Related
    ENST00000703418.1
  2. NR_188021.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC017048, KF456744
  3. NR_188022.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC017048, KF456744
    Related
    ENST00000695928.2
  4. NR_188023.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC017048, KF456744

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    176611437..176637609 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    177093539..177119723 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)