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SVBP small vasohibin binding protein [ Homo sapiens (human) ]

Gene ID: 374969, updated on 9-Feb-2020

Summary

Official Symbol
SVBPprovided by HGNC
Official Full Name
small vasohibin binding proteinprovided by HGNC
Primary source
HGNC:HGNC:29204
See related
Ensembl:ENSG00000177868 MIM:617853
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CCDC23; NEDAHM
Expression
Ubiquitous expression in testis (RPKM 21.3), fat (RPKM 15.7) and 24 other tissues See more
Orthologs

Genomic context

See SVBP in Genome Data Viewer
Location:
1p34.2
Exon count:
3
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (42807052..42817397, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (43272723..43283059, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene chromosome 1 open reading frame 50 Neighboring gene TMEM269 divergent transcript Neighboring gene uncharacterized LOC107984946 Neighboring gene transmembrane protein 269 Neighboring gene erythroblast membrane associated protein (Scianna blood group) Neighboring gene zinc finger protein 691 Neighboring gene uncharacterized LOC339539 Neighboring gene transmembrane channel like 6 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
negative regulation of endothelial cell migration IGI
Inferred from Genetic Interaction
more info
PubMed 
negative regulation of protein ubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
negative regulation of protein ubiquitination IDA
Inferred from Direct Assay
more info
PubMed 
protein secretion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein secretion IDA
Inferred from Direct Assay
more info
PubMed 
proteolysis IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
apical part of cell IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
apical part of cell IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
small vasohibin-binding protein
Names
coiled-coil domain containing 23
coiled-coil domain-containing protein 23

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199342.4NP_955374.1  small vasohibin-binding protein

    See identical proteins and their annotated locations for NP_955374.1

    Status: VALIDATED

    Source sequence(s)
    AL512353, BC029427, BM675639, BQ712089
    Consensus CDS
    CCDS474.1
    UniProtKB/Swiss-Prot
    Q8N300
    Related
    ENSP00000361599.4, ENST00000372521.9
    Conserved Domains (1) summary
    pfam15674
    Location:662
    CCDC23; Coiled-coil domain-containing protein 23

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    42807052..42817397 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017001226.1XP_016856715.1  small vasohibin-binding protein isoform X1

    UniProtKB/Swiss-Prot
    Q8N300
    Conserved Domains (1) summary
    pfam15674
    Location:662
    CCDC23; Coiled-coil domain-containing protein 23
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