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Eps8l1 EPS8-like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 361503, updated on 6-Jun-2024

Summary

Official Symbol
Eps8l1provided by RGD
Official Full Name
EPS8-like 1provided by RGD
Primary source
RGD:1311146
See related
Ensembl:ENSRNOG00000027942 AllianceGenome:RGD:1311146
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable T cell receptor binding activity and actin binding activity. Predicted to contribute to guanyl-nucleotide exchange factor activity. Predicted to be involved in Rho protein signal transduction; positive regulation of ruffle assembly; and regulation of Rho protein signal transduction. Predicted to be located in cytosol. Predicted to be part of protein-containing complex. Predicted to be active in ruffle membrane. Orthologous to human EPS8L1 (EPS8 like 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Lung (RPKM 114.4), Kidney (RPKM 23.7) and 3 other tissues See more
Orthologs
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Genomic context

See Eps8l1 in Genome Data Viewer
Location:
1q12
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (78386916..78409972, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (69343202..69359778, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (72926106..72942433, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene troponin T1, slow skeletal type Neighboring gene protein phosphatase 1, regulatory subunit 12C Neighboring gene retinol dehydrogenase 13 Neighboring gene glycoprotein VI

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables T cell receptor binding ISO
Inferred from Sequence Orthology
more info
 
enables actin binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables actin binding ISO
Inferred from Sequence Orthology
more info
 
contributes_to guanyl-nucleotide exchange factor activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in Rho protein signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in Rho protein signal transduction ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of ruffle assembly IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in positive regulation of ruffle assembly ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of Rho protein signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in regulation of Rho protein signal transduction ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of protein-containing complex ISO
Inferred from Sequence Orthology
more info
 
is_active_in ruffle membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in ruffle membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
epidermal growth factor receptor kinase substrate 8-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108467.1NP_001101937.1  epidermal growth factor receptor kinase substrate 8-like protein 1

    See identical proteins and their annotated locations for NP_001101937.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474075
    UniProtKB/TrEMBL
    A6KNL4, D3ZDV2
    Related
    ENSRNOP00000095614.1, ENSRNOT00000105965.1
    Conserved Domains (4) summary
    cd09540
    Location:623688
    SAM_EPS8-like; SAM domain of EPS8-like subfamily
    cd11764
    Location:482534
    SH3_Eps8; Src Homology 3 domain of Epidermal growth factor receptor kinase substrate 8 and similar proteins
    COG5373
    Location:159244
    COG5373; Uncharacterized membrane protein [Function unknown]
    cd01210
    Location:32162
    PTB_EPS8; Epidermal growth factor receptor kinase substrate (EPS8)-like Phosphotyrosine-binding (PTB) domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    78386916..78409972 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039081494.2XP_038937422.1  epidermal growth factor receptor kinase substrate 8-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A6KNL4, D3ZDV2
    Conserved Domains (4) summary
    cd09540
    Location:623688
    SAM_EPS8-like; SAM domain of EPS8-like subfamily
    cd11764
    Location:482534
    SH3_Eps8; Src Homology 3 domain of Epidermal growth factor receptor kinase substrate 8 and similar proteins
    COG5373
    Location:159244
    COG5373; Uncharacterized membrane protein [Function unknown]
    cd01210
    Location:32162
    PTB_EPS8; Epidermal growth factor receptor kinase substrate (EPS8)-like Phosphotyrosine-binding (PTB) domain
  2. XM_006228280.4XP_006228342.1  epidermal growth factor receptor kinase substrate 8-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006228342.1

    UniProtKB/TrEMBL
    A6KNL4, D3ZDV2
    Conserved Domains (4) summary
    cd09540
    Location:623688
    SAM_EPS8-like; SAM domain of EPS8-like subfamily
    cd11764
    Location:482534
    SH3_Eps8; Src Homology 3 domain of Epidermal growth factor receptor kinase substrate 8 and similar proteins
    COG5373
    Location:159244
    COG5373; Uncharacterized membrane protein [Function unknown]
    cd01210
    Location:32162
    PTB_EPS8; Epidermal growth factor receptor kinase substrate (EPS8)-like Phosphotyrosine-binding (PTB) domain
  3. XM_006228278.4XP_006228340.1  epidermal growth factor receptor kinase substrate 8-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006228340.1

    UniProtKB/TrEMBL
    A6KNL4, D3ZDV2
    Conserved Domains (4) summary
    cd09540
    Location:623688
    SAM_EPS8-like; SAM domain of EPS8-like subfamily
    cd11764
    Location:482534
    SH3_Eps8; Src Homology 3 domain of Epidermal growth factor receptor kinase substrate 8 and similar proteins
    COG5373
    Location:159244
    COG5373; Uncharacterized membrane protein [Function unknown]
    cd01210
    Location:32162
    PTB_EPS8; Epidermal growth factor receptor kinase substrate (EPS8)-like Phosphotyrosine-binding (PTB) domain
  4. XM_008758941.3XP_008757163.1  epidermal growth factor receptor kinase substrate 8-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_008757163.1

    UniProtKB/TrEMBL
    A6KNL4, D3ZDV2
    Conserved Domains (4) summary
    cd09540
    Location:623688
    SAM_EPS8-like; SAM domain of EPS8-like subfamily
    cd11764
    Location:482534
    SH3_Eps8; Src Homology 3 domain of Epidermal growth factor receptor kinase substrate 8 and similar proteins
    COG5373
    Location:159244
    COG5373; Uncharacterized membrane protein [Function unknown]
    cd01210
    Location:32162
    PTB_EPS8; Epidermal growth factor receptor kinase substrate (EPS8)-like Phosphotyrosine-binding (PTB) domain
  5. XM_006228279.4XP_006228341.1  epidermal growth factor receptor kinase substrate 8-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006228341.1

    UniProtKB/TrEMBL
    A6KNL4, D3ZDV2
    Conserved Domains (4) summary
    cd09540
    Location:623688
    SAM_EPS8-like; SAM domain of EPS8-like subfamily
    cd11764
    Location:482534
    SH3_Eps8; Src Homology 3 domain of Epidermal growth factor receptor kinase substrate 8 and similar proteins
    COG5373
    Location:159244
    COG5373; Uncharacterized membrane protein [Function unknown]
    cd01210
    Location:32162
    PTB_EPS8; Epidermal growth factor receptor kinase substrate (EPS8)-like Phosphotyrosine-binding (PTB) domain
  6. XM_006228282.4XP_006228344.1  epidermal growth factor receptor kinase substrate 8-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006228344.1

    UniProtKB/TrEMBL
    A6KNL4, D3ZDV2
    Conserved Domains (4) summary
    cd09540
    Location:623688
    SAM_EPS8-like; SAM domain of EPS8-like subfamily
    cd11764
    Location:482534
    SH3_Eps8; Src Homology 3 domain of Epidermal growth factor receptor kinase substrate 8 and similar proteins
    COG5373
    Location:159244
    COG5373; Uncharacterized membrane protein [Function unknown]
    cd01210
    Location:32162
    PTB_EPS8; Epidermal growth factor receptor kinase substrate (EPS8)-like Phosphotyrosine-binding (PTB) domain
  7. XM_063266295.1XP_063122365.1  epidermal growth factor receptor kinase substrate 8-like protein 1 isoform X2

    UniProtKB/TrEMBL
    D3ZDV2

RNA

  1. XR_350145.5 RNA Sequence

  2. XR_005487826.2 RNA Sequence