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NANOGNB NANOG neighbor homeobox [ Homo sapiens (human) ]

Gene ID: 360030, updated on 11-Jun-2021

Summary

Official Symbol
NANOGNBprovided by HGNC
Official Full Name
NANOG neighbor homeoboxprovided by HGNC
Primary source
HGNC:HGNC:24958
See related
Ensembl:ENSG00000205857
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See NANOGNB in Genome Data Viewer
Location:
12p13.31
Exon count:
4
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 12 NC_000012.12 (7765216..7774121)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (7917812..7926717)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene developmental pluripotency associated 3 Neighboring gene C-type lectin domain family 4 member C Neighboring gene NANOG 5' regulatory region Neighboring gene Nanog homeobox Neighboring gene solute carrier family 2 member 14 Neighboring gene ribosomal protein S20 pseudogene 29

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription factor activity, RNA polymerase II-specific ISA
Inferred from Sequence Alignment
more info
 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in chromatin ISA
Inferred from Sequence Alignment
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
NANOG neighbor homeobox
Names
homeobox C14
homeobox protein C14

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145465.1NP_001138937.1  NANOG neighbor homeobox

    See identical proteins and their annotated locations for NP_001138937.1

    Status: VALIDATED

    Source sequence(s)
    AY151139
    Consensus CDS
    CCDS44826.1
    UniProtKB/Swiss-Prot
    Q7Z5D8
    Related
    ENSP00000371553.1, ENST00000382119.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p13 Primary Assembly

    Range
    7765216..7774121
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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