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Tc00.1047053511305.10 5'-3' exonuclease XRNB, putative [ Trypanosoma cruzi ]

Gene ID: 3536283, updated on 23-Nov-2023

Summary

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Gene symbol
Tc00.1047053511305.10
Gene description
5'-3' exonuclease XRNB, putative
Locus tag
Tc00.1047053511305.10
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Trypanosoma cruzi (strain: CL Brener)
Lineage
Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina; Trypanosomatida; Trypanosomatidae; Trypanosoma; Schizotrypanum
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Genomic context

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See Tc00.1047053511305.10 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
1

NW_001849567.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_001849567.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. El-Sayed NM, et al. Science, 2005 Jul 15. PMID 16020725
  2. Comparative genomics of trypanosomatid parasitic protozoa. El-Sayed NM, et al. Science, 2005 Jul 15. PMID 16020724

GeneRIFs: Gene References Into Functions

General gene information

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Homology

  • heterozygous, Esmeraldo-like haplotype
    allele of Tc00.1047053507087.80

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-3' RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
5'-3' exonuclease XRNB, putative
XP_806311.1
  • XRNB: pers. comm. C. Clayton, University of Heidelberg
    heterozygous, Esmeraldo-like haplotype
    allele of Tc00.1047053507087.80

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001849567.1 Reference assembly

    Range
    136613..139552 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_801218.1 → XP_806311.1  5'-3' exonuclease XRNB, putative [Trypanosoma cruzi]

    See identical proteins and their annotated locations for XP_806311.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2V2X875, A0A7J6YF25, Q4CW10
    Conserved Domains (1) summary
    pfam03159
    Location:2 → 303
    XRN_N; XRN 5'-3' exonuclease N-terminus
Nucleotide Protein
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