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SPATA12 spermatogenesis associated 12 [ Homo sapiens (human) ]

Gene ID: 353324, updated on 23-Nov-2021

Summary

Official Symbol
SPATA12provided by HGNC
Official Full Name
spermatogenesis associated 12provided by HGNC
Primary source
HGNC:HGNC:23221
See related
Ensembl:ENSG00000186451 MIM:609869
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SRG5
Summary
This gene is expressed primarily in testis and may play a role in testicular development and spermatogenesis. The encoded protein may be upregulated in response to ultraviolet-C radiation. [provided by RefSeq, Dec 2015]
Expression
Restricted expression toward testis (RPKM 5.7) See more
Orthologs
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Genomic context

See SPATA12 in Genome Data Viewer
Location:
3p14.3
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (57060664..57075432)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (57094692..57109460)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene Rho guanine nucleotide exchange factor 3 Neighboring gene ARHGEF3 antisense RNA 1 Neighboring gene Sharpr-MPRA regulatory region 6639 Neighboring gene interleukin 17 receptor D Neighboring gene Sharpr-MPRA regulatory region 8210 Neighboring gene ribosomal protein L19 pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
spermatogenesis-associated protein 12
Names
spermatogenesis-related protein 5
testicular tissue protein Li 184

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_181727.2NP_859078.1  spermatogenesis-associated protein 12

    See identical proteins and their annotated locations for NP_859078.1

    Status: REVIEWED

    Source sequence(s)
    AY221117
    Consensus CDS
    CCDS2879.1
    UniProtKB/Swiss-Prot
    Q7Z6I5
    UniProtKB/TrEMBL
    A0A140VJV7
    Related
    ENSP00000335392.1, ENST00000334325.2

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    57060664..57075432
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024453510.1XP_024309278.1  spermatogenesis-associated protein 12 isoform X1

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