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DPY19L2P2 DPY19L2 pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 349152, updated on 1-Jun-2020

Summary

Official Symbol
DPY19L2P2provided by HGNC
Official Full Name
DPY19L2 pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:21764
See related
Ensembl:ENSG00000170629
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 15.0), bone marrow (RPKM 0.9) and 1 other tissue See more

Genomic context

See DPY19L2P2 in Genome Data Viewer
Location:
7q22.1
Exon count:
25
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (103175013..103280466, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (102815460..102920913, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene N-acyl phosphatidylethanolamine phospholipase D Neighboring gene uncharacterized LOC105375434 Neighboring gene ribosomal protein L19 pseudogene 12 Neighboring gene ribosomal protein L23a pseudogene 95 Neighboring gene S100A11 pseudogene 1 Neighboring gene peptidase, mitochondrial processing subunit beta Neighboring gene DnaJ heat shock protein family (Hsp40) member C2 Neighboring gene ribosomal protein S29 pseudogene 16 Neighboring gene proteasome 26S subunit, ATPase 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • Dpy-19-like protein 2 pseudogene 2
  • Protein dpy-19 homolog 2-like 2
  • Putative C-mannosyltransferase DPY19L2P2
  • dpy-19-like 2 pseudogene 2

Clone Names

  • FLJ36166, DKFZp434E092, DKFZp586E1120, DKFZp779M0267

Gene Ontology Provided by GOA

Function Evidence Code Pubs
mannosyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
spermatid development IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
nuclear inner membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003561.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has multiple differences and is shorter compared to variant 1.
    Source sequence(s)
    AC004668, AC007683, AK131353, AL834175, DB094748, N40211
    Related
    ENST00000411491.5
  2. NR_027768.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript
    Source sequence(s)
    AC007683, AL834175, BC023575, N40211
    Related
    ENST00000439473.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    103175013..103280466 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NT_187559.1 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    1443..67085
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_182634.2: Suppressed sequence

    Description
    NM_182634.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
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