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LSM5 U6 snRNA-associated Sm-like protein LSm5 [ Kluyveromyces marxianus DMKU3-1042 ]

Gene ID: 34714511, updated on 17-May-2024

Summary

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Gene symbol
LSM5
Gene description
U6 snRNA-associated Sm-like protein LSm5
Locus tag
KLMA_20025
See related
FungiDB:KLMA_20025; VEuPathDB:KLMA_20025
Gene type
protein coding
RNA name
U6 snRNA-associated Sm-like protein LSm5
RefSeq status
PROVISIONAL
Organism
Kluyveromyces marxianus DMKU3-1042 (strain: DMKU3-1042)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Kluyveromyces
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Genomic context

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See LSM5 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_036026.1 (62046..62315, complement)

Chromosome 2 - NC_036026.1Genomic Context describing neighboring genes Neighboring gene trehalose-phosphatase Neighboring gene inositolphosphotransferase 1 Neighboring gene polyamine N-acetyltransferase 1 Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_036026.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic basis of the highly efficient yeast Kluyveromyces marxianus: complete genome sequence and transcriptome analyses. Lertwattanasakul N, et al. Biotechnol Biofuels, 2015. PMID 25834639, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Lsm1-7-Pat1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U6 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
U6 snRNA-associated Sm-like protein LSm5

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_036026.1 Reference assembly

    Range
    62046..62315 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022822557.1 → XP_022674366.1  U6 snRNA-associated Sm-like protein LSm5 [Kluyveromyces marxianus DMKU3-1042]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    W0T601
    Conserved Domains (1) summary
    cd01732
    Location:7 → 79
    LSm5; Like-Sm protein 5
Nucleotide Protein
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