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GARIN1A golgi associated RAB2 interactor 1A [ Homo sapiens (human) ]

Gene ID: 346653, updated on 26-Nov-2021

Summary

Official Symbol
GARIN1Aprovided by HGNC
Official Full Name
golgi associated RAB2 interactor 1Aprovided by HGNC
Primary source
HGNC:HGNC:27998
See related
Ensembl:ENSG00000205085
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GARI; FAM137B; FAM71F2
Expression
Biased expression in testis (RPKM 2.7), fat (RPKM 0.3) and 10 other tissues See more
Orthologs
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Genomic context

See GARIN1A in Genome Data Viewer
Location:
7q32.1
Exon count:
12
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (128671628..128702262)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (128312346..128327931)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101928451 Neighboring gene RNA, U6 small nuclear 177, pseudogene Neighboring gene long intergenic non-protein coding RNA 1000 Neighboring gene capicua transcriptional repressor pseudogene 14 Neighboring gene RNA, 5S ribosomal pseudogene 242 Neighboring gene RNA, 5S ribosomal pseudogene 243 Neighboring gene IMP3 pseudogene 2 Neighboring gene golgi associated RAB2 interactor 1B Neighboring gene calumenin Neighboring gene RNA, 7SL, cytoplasmic 81, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

General protein information

Preferred Names
protein FAM71F2
Names
Golgi-associated RAB2B interactor
family with sequence similarity 137, member B
family with sequence similarity 71 member F2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_034049.1 RefSeqGene

    Range
    5001..20607
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001012454.6NP_001012457.3  protein FAM71F2 isoform a

    See identical proteins and their annotated locations for NP_001012457.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).
    Source sequence(s)
    AC018638, BC047310, BC066973
    Consensus CDS
    CCDS47701.1
    UniProtKB/Swiss-Prot
    Q6NXP2
    Related
    ENSP00000493102.1, ENST00000641605.1
    Conserved Domains (1) summary
    pfam12480
    Location:114185
    DUF3699; Protein of unknown function (DUF3699)
  2. NM_001128926.4NP_001122398.1  protein FAM71F2 isoform b

    See identical proteins and their annotated locations for NP_001122398.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame acceptor splice site in the 5' coding region compared to variant 1. The resulting shorter isoform (b) lacks a 9 aa protein segment compared to isoform a.
    Source sequence(s)
    AC018638, BC105730, HY039605
    Consensus CDS
    CCDS47702.1
    UniProtKB/Swiss-Prot
    Q6NXP2
    Related
    ENSP00000506740.1, ENST00000682356.1
    Conserved Domains (1) summary
    pfam12480
    Location:111176
    DUF3699; Protein of unknown function (DUF3699)
  3. NM_001290254.2NP_001277183.1  protein FAM71F2 isoform c

    See identical proteins and their annotated locations for NP_001277183.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has an alternate exon and initiates translation at a downstream AUG compared to variant 1. The encoded protein (isoform c) has a shorter N-terminus compared to isoform a. Variants 3 and 4 encode the same protein.
    Source sequence(s)
    AC018638, HY046252
    Conserved Domains (1) summary
    pfam12480
    Location:2590
    DUF3699; Protein of unknown function (DUF3699)
  4. NM_001290255.2NP_001277184.1  protein FAM71F2 isoform c

    See identical proteins and their annotated locations for NP_001277184.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) has an alternate exon, uses an alternate acceptor splice site, and initiates translation at a downstream AUG compared to variant 1. The encoded protein (isoform c) has a shorter N-terminus compared to isoform a. Variants 3 and 4 encode the same protein.
    Source sequence(s)
    AC018638, HY039605
    Conserved Domains (1) summary
    pfam12480
    Location:2590
    DUF3699; Protein of unknown function (DUF3699)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    128671628..128702262
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011516136.2XP_011514438.1  protein FAM71F2 isoform X4

    See identical proteins and their annotated locations for XP_011514438.1

    Conserved Domains (1) summary
    pfam12480
    Location:2590
    DUF3699; Protein of unknown function (DUF3699)
  2. XM_011516135.2XP_011514437.1  protein FAM71F2 isoform X4

    See identical proteins and their annotated locations for XP_011514437.1

    Conserved Domains (1) summary
    pfam12480
    Location:2590
    DUF3699; Protein of unknown function (DUF3699)
  3. XM_017012147.1XP_016867636.1  protein FAM71F2 isoform X4

    Conserved Domains (1) summary
    pfam12480
    Location:2590
    DUF3699; Protein of unknown function (DUF3699)
  4. XM_024446752.1XP_024302520.1  protein FAM71F2 isoform X4

    Conserved Domains (1) summary
    pfam12480
    Location:2590
    DUF3699; Protein of unknown function (DUF3699)
  5. XM_011516130.2XP_011514432.1  protein FAM71F2 isoform X1

    See identical proteins and their annotated locations for XP_011514432.1

    UniProtKB/Swiss-Prot
    Q6NXP2
    Conserved Domains (1) summary
    pfam12480
    Location:114185
    DUF3699; Protein of unknown function (DUF3699)
  6. XM_011516129.2XP_011514431.1  protein FAM71F2 isoform X1

    See identical proteins and their annotated locations for XP_011514431.1

    UniProtKB/Swiss-Prot
    Q6NXP2
    Conserved Domains (1) summary
    pfam12480
    Location:114185
    DUF3699; Protein of unknown function (DUF3699)
  7. XM_011516128.2XP_011514430.1  protein FAM71F2 isoform X1

    See identical proteins and their annotated locations for XP_011514430.1

    UniProtKB/Swiss-Prot
    Q6NXP2
    Conserved Domains (1) summary
    pfam12480
    Location:114185
    DUF3699; Protein of unknown function (DUF3699)
  8. XM_011516132.2XP_011514434.1  protein FAM71F2 isoform X3

    See identical proteins and their annotated locations for XP_011514434.1

    UniProtKB/Swiss-Prot
    Q6NXP2
    Related
    ENSP00000493352.1, ENST00000641888.1
    Conserved Domains (1) summary
    pfam12480
    Location:111176
    DUF3699; Protein of unknown function (DUF3699)
  9. XM_011516131.2XP_011514433.1  protein FAM71F2 isoform X1

    See identical proteins and their annotated locations for XP_011514433.1

    UniProtKB/Swiss-Prot
    Q6NXP2
    Conserved Domains (1) summary
    pfam12480
    Location:114185
    DUF3699; Protein of unknown function (DUF3699)
  10. XM_024446751.1XP_024302519.1  protein FAM71F2 isoform X2

    Related
    ENSP00000507417.1, ENST00000684498.1
    Conserved Domains (1) summary
    pfam12480
    Location:115180
    DUF3699; Protein of unknown function (DUF3699)
  11. XM_017012149.1XP_016867638.1  protein FAM71F2 isoform X5

  12. XM_011516134.2XP_011514436.1  protein FAM71F2 isoform X4

    See identical proteins and their annotated locations for XP_011514436.1

    Conserved Domains (1) summary
    pfam12480
    Location:2590
    DUF3699; Protein of unknown function (DUF3699)
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