Format

Send to:

Choose Destination

PALM3 paralemmin 3 [ Homo sapiens (human) ]

Gene ID: 342979, updated on 23-Nov-2021

Summary

Official Symbol
PALM3provided by HGNC
Official Full Name
paralemmin 3provided by HGNC
Primary source
HGNC:HGNC:33274
See related
Ensembl:ENSG00000187867
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in kidney (RPKM 13.7), liver (RPKM 6.5) and 10 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See PALM3 in Genome Data Viewer
Location:
19p13.12
Exon count:
7
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (14053367..14062137, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (14164179..14172888, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene relaxin 3 Neighboring gene interleukin 27 receptor subunit alpha Neighboring gene eukaryotic translation elongation factor 1 delta pseudogene 1 Neighboring gene microRNA 1199 Neighboring gene MISP family member 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145028.2NP_001138500.2  paralemmin-3 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC022098
    Consensus CDS
    CCDS46001.1
    Related
    ENSP00000499271.1, ENST00000669674.2
    Conserved Domains (2) summary
    cl25750
    Location:571674
    DamX; Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning]
    cl27511
    Location:386578
    Na_Ca_ex; Sodium/calcium exchanger protein
  2. NM_001367327.1NP_001354256.1  paralemmin-3 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to variant 1.
    Source sequence(s)
    AC022098
    Related
    ENSP00000465701.2, ENST00000589048.2
    Conserved Domains (2) summary
    cl25750
    Location:505608
    DamX; Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning]
    cl27511
    Location:320512
    Na_Ca_ex; Sodium/calcium exchanger protein

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    14053367..14062137 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011527965.2XP_011526267.1  paralemmin-3 isoform X2

    Conserved Domains (2) summary
    PRK10905
    Location:544647
    PRK10905; cell division protein DamX; Validated
    TIGR00927
    Location:359551
    2A1904; K+-dependent Na+/Ca+ exchanger

Reference GRCh38.p13 PATCHES

Genomic

  1. NW_021160022.1 Reference GRCh38.p13 PATCHES

    Range
    265208..273917 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center