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LINC01020 long intergenic non-protein coding RNA 1020 [ Homo sapiens (human) ]

Gene ID: 340094, updated on 17-Sep-2024

Summary

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Official Symbol
LINC01020provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1020provided by HGNC
Primary source
HGNC:HGNC:27968
See related
Ensembl:ENSG00000215231 AllianceGenome:HGNC:27968
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward kidney (RPKM 2.1) See more
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Genomic context

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See LINC01020 in Genome Data Viewer
Location:
5p15.32
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (5034359..5070004)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (4961981..4997621)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (5034472..5070117)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986400 Neighboring gene uncharacterized LOC105374629 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:4866628-4867128 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:4867129-4867629 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22316 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:4892907-4893408 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_85978 Neighboring gene uncharacterized LOC105374630 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22318 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22317 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22319 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22320 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22321 Neighboring gene long intergenic non-protein coding RNA 2121 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22322 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:5139649-5140215 Neighboring gene ADAMTS16 divergent transcript Neighboring gene RN7SK pseudogene 73

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • CTD-2247C11.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026994.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010451, BC042977, BC113532
    Related
    ENST00000508201.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    5034359..5070004
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    4961981..4997621
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
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