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LINC01020 long intergenic non-protein coding RNA 1020 [ Homo sapiens (human) ]

Gene ID: 340094, updated on 13-May-2022

Summary

Official Symbol
LINC01020provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1020provided by HGNC
Primary source
HGNC:HGNC:27968
See related
Ensembl:ENSG00000215231 AllianceGenome:HGNC:27968
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward kidney (RPKM 2.1) See more
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Genomic context

See LINC01020 in Genome Data Viewer
Location:
5p15.32
Exon count:
7
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (5034359..5070004)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (4961981..4997621)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (5034472..5070117)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986400 Neighboring gene uncharacterized LOC105374629 Neighboring gene uncharacterized LOC105374630 Neighboring gene long intergenic non-protein coding RNA 2121 Neighboring gene ADAMTS16 divergent transcript Neighboring gene RN7SK pseudogene 73

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026994.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010451, BC042977, BC113532
    Related
    ENST00000508201.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    5034359..5070004
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    4961981..4997621
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)