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LINC01139 long intergenic non-protein coding RNA 1139 [ Homo sapiens (human) ]

Gene ID: 339535, updated on 13-May-2022

Summary

Official Symbol
LINC01139provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1139provided by HGNC
Primary source
HGNC:HGNC:27924
See related
Ensembl:ENSG00000215808 AllianceGenome:HGNC:27924
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINKA; LINK-A
Expression
Biased expression in endometrium (RPKM 6.7), kidney (RPKM 6.3) and 7 other tissues See more
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Genomic context

See LINC01139 in Genome Data Viewer
Location:
1q43
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (238480384..238486017, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (237891834..237897469, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (238643684..238649317, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 9340 Neighboring gene uncharacterized LOC105373220 Neighboring gene RNA, U6 small nuclear 725, pseudogene Neighboring gene keratin 18 pseudogene 32 Neighboring gene uncharacterized LOC124904565

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • TCONS_00000027
  • long intergenic non-coding RNA for kinase activation

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015407.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI302836, BC044843, BC073894
    Related
    ENST00000400946.3

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    238480384..238486017 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    237891834..237897469 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)