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CCDC190 coiled-coil domain containing 190 [ Homo sapiens (human) ]

Gene ID: 339512, updated on 13-Feb-2019

Summary

Official Symbol
CCDC190provided by HGNC
Official Full Name
coiled-coil domain containing 190provided by HGNC
Primary source
HGNC:HGNC:28736
See related
Ensembl:ENSG00000185860
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C1orf110
Expression
Low expression observed in reference dataset See more
Orthologs

Genomic context

See CCDC190 in Genome Data Viewer
Location:
1q23.3
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 1 NC_000001.11 (162851291..162868918, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (162820766..162838605, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene discoidin domain receptor tyrosine kinase 2 Neighboring gene RNA, 7SL, cytoplasmic 861, pseudogene Neighboring gene hydroxysteroid 17-beta dehydrogenase 7 Neighboring gene cytochrome c oxidase subunit 7B, mitochondrial pseudogene Neighboring gene uncharacterized LOC107985223

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Phenotypes

NHGRI GWAS Catalog

Description
Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • FLJ41579, MGC48998

General protein information

Preferred Names
coiled-coil domain-containing protein 190

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_178550.4NP_848645.3  coiled-coil domain-containing protein 190

    See identical proteins and their annotated locations for NP_848645.3

    Status: VALIDATED

    Source sequence(s)
    AK123573, AL392003, BC040018
    Consensus CDS
    CCDS44269.1
    UniProtKB/Swiss-Prot
    Q86UF4
    Related
    ENSP00000356886.1, ENST00000367910.5
    Conserved Domains (1) summary
    pfam15768
    Location:9277
    DUF4697; Domain of unknown function (DUF4697)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p12 Primary Assembly

    Range
    162851291..162868918 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006711289.3XP_006711352.1  coiled-coil domain-containing protein 190 isoform X3

    Conserved Domains (1) summary
    pfam15768
    Location:9276
    DUF4697; Domain of unknown function (DUF4697)
  2. XM_005245125.3XP_005245182.1  coiled-coil domain-containing protein 190 isoform X2

    Conserved Domains (1) summary
    pfam15768
    Location:21288
    DUF4697; Domain of unknown function (DUF4697)
  3. XM_011509477.2XP_011507779.1  coiled-coil domain-containing protein 190 isoform X1

    Conserved Domains (1) summary
    pfam15768
    Location:21289
    DUF4697; Domain of unknown function (DUF4697)
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