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CCDC190 coiled-coil domain containing 190 [ Homo sapiens (human) ]

Gene ID: 339512, updated on 4-Nov-2022

Summary

Official Symbol
CCDC190provided by HGNC
Official Full Name
coiled-coil domain containing 190provided by HGNC
Primary source
HGNC:HGNC:28736
See related
Ensembl:ENSG00000185860 AllianceGenome:HGNC:28736
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C1orf110
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See CCDC190 in Genome Data Viewer
Location:
1q23.3
Exon count:
5
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (162851020..162868833, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (162195581..162213515, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (162820810..162838623, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene discoidin domain receptor tyrosine kinase 2 Neighboring gene RNA, 7SL, cytoplasmic 861, pseudogene Neighboring gene hydroxysteroid 17-beta dehydrogenase 7 Neighboring gene Sharpr-MPRA regulatory region 14373 Neighboring gene cytochrome c oxidase subunit 7B, mitochondrial-like Neighboring gene uncharacterized LOC107985223

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • FLJ41579, MGC48998

General protein information

Preferred Names
coiled-coil domain-containing protein 190

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001394065.1NP_001380994.1  coiled-coil domain-containing protein 190 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL392003
    Consensus CDS
    CCDS91094.1
    UniProtKB/TrEMBL
    A0A8J8YXK0
    Related
    ENSP00000356888.3, ENST00000367912.7
    Conserved Domains (1) summary
    pfam15768
    Location:9276
    CC190; Coiled-coil domain-containing protein 190
  2. NM_178550.6NP_848645.3  coiled-coil domain-containing protein 190 isoform 2

    See identical proteins and their annotated locations for NP_848645.3

    Status: VALIDATED

    Source sequence(s)
    AK123573, AL392003, BC040018
    Consensus CDS
    CCDS44269.1
    UniProtKB/Swiss-Prot
    Q6ZW57, Q86UF4
    Related
    ENSP00000356886.1, ENST00000367910.5
    Conserved Domains (1) summary
    pfam15768
    Location:9277
    DUF4697; Domain of unknown function (DUF4697)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    162851020..162868833 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    162195581..162213515 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)