U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CCDC144NL CCDC144A N-terminal like (pseudogene) [ Homo sapiens (human) ]

Gene ID: 339184, updated on 10-Oct-2023

Summary

Official Symbol
CCDC144NLprovided by HGNC
Official Full Name
CCDC144A N-terminal like (pseudogene)provided by HGNC
Primary source
HGNC:HGNC:33735
See related
Ensembl:ENSG00000291074 AllianceGenome:HGNC:33735
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 1.4), ovary (RPKM 0.2) and 3 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See CCDC144NL in Genome Data Viewer
Location:
17p11.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (20863395..20896163, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (20812211..20844977, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (20766708..20799476, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene stearoyl-CoA desaturase pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8309 Neighboring gene ABHD17A pseudogene 6 Neighboring gene CCDC144NL antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:20771529-20772419 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20795800-20796300 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20796301-20796801 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:20799361-20799876 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:20802310-20803177 Neighboring gene RNA, U6 small nuclear 1178, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:20811295-20811890 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8310 Neighboring gene ribonuclease H1 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20841589-20842090 Neighboring gene uncharacterized LOC124900389 Neighboring gene Sharpr-MPRA regulatory region 15661 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:20845395-20845894 Neighboring gene uncharacterized LOC339260 Neighboring gene SPECC1 pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • CCDC144A N-terminal pseudogene
  • coiled-coil domain containing 144 family, N-terminal like
  • putative coiled-coil domain-containing protein 144 N-terminal-like

Clone Names

  • MGC87631

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_164128.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090774
    Related
    ENST00000327925.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    20863395..20896163 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    20812211..20844977 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001004306.2: Suppressed sequence

    Description
    NM_001004306.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.