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CCDC144NL CCDC144A N-terminal pseudogene [ Homo sapiens (human) ]

Gene ID: 339184, updated on 25-Oct-2022

Summary

Official Symbol
CCDC144NLprovided by HGNC
Official Full Name
CCDC144A N-terminal pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:33735
See related
Ensembl:ENSG00000291074 AllianceGenome:HGNC:33735
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 1.4), ovary (RPKM 0.2) and 3 other tissues See more
Orthologs
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Genomic context

See CCDC144NL in Genome Data Viewer
Location:
17p11.2
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (20863395..20896163, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (20812211..20844977, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (20766708..20799476, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene stearoyl-CoA desaturase pseudogene 1 Neighboring gene ABHD17A pseudogene 6 Neighboring gene CCDC144NL antisense RNA 1 Neighboring gene RNA, U6 small nuclear 1178, pseudogene Neighboring gene ribonuclease H1 pseudogene 1 Neighboring gene uncharacterized LOC124900389 Neighboring gene uncharacterized LOC339260 Neighboring gene SPECC1 pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Other Names

  • coiled-coil domain containing 144 family, N-terminal like
  • putative coiled-coil domain-containing protein 144 N-terminal-like

Clone Names

  • MGC87631

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_164128.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090774
    Related
    ENST00000327925.6

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    20863395..20896163 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    20812211..20844977 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001004306.2: Suppressed sequence

    Description
    NM_001004306.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.