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TMEM202 transmembrane protein 202 [ Homo sapiens (human) ]

Gene ID: 338949, updated on 13-May-2022

Summary

Official Symbol
TMEM202provided by HGNC
Official Full Name
transmembrane protein 202provided by HGNC
Primary source
HGNC:HGNC:33733
See related
Ensembl:ENSG00000187806 AllianceGenome:HGNC:33733
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis (RPKM 5.8) See more
Orthologs
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Genomic context

See TMEM202 in Genome Data Viewer
Location:
15q23-q24.1
Exon count:
6
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (72398305..72408367)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (70215636..70225698)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (72690646..72700708)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene HEXA antisense RNA 1 Neighboring gene ribosomal protein L12 pseudogene 35 Neighboring gene TMEM202 antisense RNA 1 Neighboring gene PHB1 pseudogene 20 Neighboring gene ariadne RBR E3 ubiquitin protein ligase 1 Neighboring gene microRNA 630

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Clone Names

  • FLJ27523

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080462.3NP_001073931.1  transmembrane protein 202

    See identical proteins and their annotated locations for NP_001073931.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest, protein-coding variant.
    Source sequence(s)
    AC009690, AC079322
    Consensus CDS
    CCDS32287.1
    UniProtKB/Swiss-Prot
    A6NGA9
    Related
    ENSP00000340212.3, ENST00000341689.4

RNA

  1. NR_148418.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009690, AC079322, AK131033, BX105628
  2. NR_148419.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009690, AC079322, AK131033

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    72398305..72408367
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011521497.3XP_011519799.1  transmembrane protein 202 isoform X1

  2. XM_024449910.2XP_024305678.1  transmembrane protein 202 isoform X2

  3. XM_011521499.3XP_011519801.1  transmembrane protein 202 isoform X3

    See identical proteins and their annotated locations for XP_011519801.1

    Related
    ENSP00000497819.1, ENST00000649825.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    70215636..70225698
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)