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Cyb5d1 cytochrome b5 domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 327951, updated on 30-Apr-2024

Summary

Official Symbol
Cyb5d1provided by MGI
Official Full Name
cytochrome b5 domain containing 1provided by MGI
Primary source
MGI:MGI:2685586
See related
Ensembl:ENSMUSG00000044795 AllianceGenome:MGI:2685586
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm740
Summary
Predicted to enable metal ion binding activity. Is expressed in several structures, including alimentary system; brain; connective tissue; genitourinary system; and immune system. Orthologous to human CYB5D1 (cytochrome b5 domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in bladder adult (RPKM 13.4), CNS E11.5 (RPKM 9.1) and 28 other tissues See more
Orthologs
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Genomic context

See Cyb5d1 in Genome Data Viewer
Location:
11 B3; 11 42.59 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (69281756..69287005, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (69390930..69395727, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene chromodomain helicase DNA binding protein 3 Neighboring gene predicted gene, 22442 Neighboring gene STARR-positive B cell enhancer ABC_E5240 Neighboring gene predicted gene, 32483 Neighboring gene STARR-positive B cell enhancer ABC_E7004 Neighboring gene STARR-positive B cell enhancer ABC_E5241 Neighboring gene transmembrane protein 88 Neighboring gene N(alpha)-acetyltransferase 38, NatC auxiliary subunit Neighboring gene KDM1 lysine (K)-specific demethylase 6B Neighboring gene STARR-positive B cell enhancer ABC_E2996 Neighboring gene STARR-positive B cell enhancer ABC_E5242 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:69223376-69223485 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:69231989-69232098 Neighboring gene predicted gene, 51903

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Clone Names

  • MGC118302

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
involved_in cilium movement IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
is_active_in cellular_component ND
No biological Data available
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
cytochrome b5 domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045525.2NP_001038990.1  cytochrome b5 domain-containing protein 1

    See identical proteins and their annotated locations for NP_001038990.1

    Status: VALIDATED

    Source sequence(s)
    AL596125
    Consensus CDS
    CCDS24892.1
    UniProtKB/Swiss-Prot
    Q5NCY3, Q5NCY4
    Related
    ENSMUSP00000059709.5, ENSMUST00000051620.5
    Conserved Domains (1) summary
    pfam00173
    Location:2170
    Cyt-b5; Cytochrome b5-like Heme/Steroid binding domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    69281756..69287005 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011249073.4XP_011247375.1  cytochrome b5 domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011247375.1

    UniProtKB/Swiss-Prot
    Q5NCY3, Q5NCY4
    Conserved Domains (1) summary
    pfam00173
    Location:2170
    Cyt-b5; Cytochrome b5-like Heme/Steroid binding domain