U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CNH03660 alpha-amylase AmyA, putative [ Cryptococcus neoformans var. neoformans JEC21 ]

Gene ID: 3259116, updated on 17-May-2024

Summary

Go to the top of the page Help
Gene symbol
CNH03660
Gene description
alpha-amylase AmyA, putative
Locus tag
CNH03660
See related
FungiDB:CNH03660; VEuPathDB:CNH03660
Gene type
protein coding
RNA name
alpha-amylase AmyA, putative
RefSeq status
PROVISIONAL
Organism
Cryptococcus neoformans var. neoformans JEC21 (strain: JEC21, serotype: D)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 8
Exon count:
7
Sequence:
Chromosome: 8; NC_006693.1 (60244..62780)

Chromosome 8 - NC_006693.1Genomic Context describing neighboring genes Neighboring gene expressed protein Neighboring gene hypothetical protein Neighboring gene expressed protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_006693.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans. Loftus BJ, et al. Science, 2005 Feb 25. PMID 15653466, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-amylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
alpha-amylase AmyA, putative

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_006693.1 Reference assembly

    Range
    60244..62780
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_572528.2 → XP_572528.1  alpha-amylase AmyA, putative [Cryptococcus neoformans var. neoformans JEC21]

    See identical proteins and their annotated locations for XP_572528.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A225Z5T3, Q55LP9, Q5K924
    Conserved Domains (3) summary
    cd11319
    Location:20 → 402
    AmyAc_euk_AmyA; Alpha amylase catalytic domain found in eukaryotic Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)
    pfam00128
    Location:57 → 368
    Alpha-amylase; Alpha amylase, catalytic domain
    pfam09260
    Location:413 → 497
    DUF1966; Domain of unknown function (DUF1966)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials