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Grep1 glycine rich extracellular protein 1 [ Mus musculus (house mouse) ]

Gene ID: 320309, updated on 29-Nov-2022

Summary

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Official Symbol
Grep1provided by MGI
Official Full Name
glycine rich extracellular protein 1provided by MGI
Primary source
MGI:MGI:2443785
See related
Ensembl:ENSMUSG00000043747 AllianceGenome:MGI:2443785
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1520401A03Rik
Expression
Biased expression in testis adult (RPKM 2.1), limb E14.5 (RPKM 1.0) and 4 other tissues See more
Orthologs
human all
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Genomic context

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See Grep1 in Genome Data Viewer
Location:
17; 17 A3.3
Exon count:
43
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (23923582..23945299, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (23704608..23726451, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene claudin 6 Neighboring gene claudin 9 Neighboring gene protein kinase, membrane associated tyrosine/threonine 1 Neighboring gene progestin and adipoQ receptor family member IV Neighboring gene kringle containing transmembrane protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
decreased expression in renal and prostate cancer protein; elastin; fibroin heavy chain; glutenin, high molecular weight subunit DX5; glutenin, high molecular weight subunit PW212; glycine rich extracellular protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    23923582..23945299 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017317755.3 → XP_017173244.1  elastin isoform X8

    Conserved Domains (1) summary
    pfam09606
    Location:11 → 333
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

  2. XM_017317753.3 → XP_017173242.1  elastin isoform X8

    Conserved Domains (1) summary
    pfam09606
    Location:11 → 333
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

  3. XM_017317750.2 → XP_017173239.1  glutenin, high molecular weight subunit DX5 isoform X5

    Conserved Domains (1) summary
    pfam09606
    Location:80 → 381
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

  4. XM_017317748.2 → XP_017173237.1  glutenin, high molecular weight subunit DX5 isoform X3

    Conserved Domains (1) summary
    pfam09606
    Location:126 → 391
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

  5. XM_017317756.2 → XP_017173245.1  decreased expression in renal and prostate cancer protein isoform X9

    Conserved Domains (1) summary
    pfam09606
    Location:92 → 326
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

  6. XM_017317749.2 → XP_017173238.1  fibroin heavy chain isoform X4

    Conserved Domains (1) summary
    pfam09606
    Location:80 → 402
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

  7. XM_017317746.2 → XP_017173235.1  fibroin heavy chain isoform X1

    Conserved Domains (1) summary
    pfam09606
    Location:80 → 402
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

  8. XM_017317752.2 → XP_017173241.1  glutenin, high molecular weight subunit PW212 isoform X7

  9. XM_017317751.2 → XP_017173240.1  glutenin, high molecular weight subunit PW212 isoform X6

    Conserved Domains (1) summary
    pfam09606
    Location:80 → 369
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

  10. XM_017317747.2 → XP_017173236.1  fibroin heavy chain isoform X2

  11. XM_017317758.2 → XP_017173247.1  fibroin heavy chain isoform X11

    Conserved Domains (1) summary
    pfam09606
    Location:49 → 436
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

  12. XM_017317757.2 → XP_017173246.1  fibroin heavy chain isoform X10

    Related
    ENSMUSP00000144664.2, ENSMUST00000201734.4
    Conserved Domains (1) summary
    pfam09606
    Location:49 → 448
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

RNA

  1. XR_001782162.2 RNA Sequence

  2. XR_876666.3 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_177132.3: Suppressed sequence

    Description
    NM_177132.3: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
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